Laribacter hongkongensis: LHK_00960
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Entry
LHK_00960 CDS
T00884
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
lhk
Laribacter hongkongensis
Pathway
lhk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LHK_00960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhk03400
]
LHK_00960
DNA repair and recombination proteins [BR:
lhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LHK_00960
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LHK_00960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
Kinesin
AAA_22
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ACO73952
UniProt:
C1D5D5
LinkDB
All DBs
Position
920538..922547
Genome browser
AA seq
669 aa
AA seq
DB search
MADIATFPGSPYRLHQPFPPAGDQPTAIAGLVEGLSDGLAFQTLLGVTGSGKTYTMANVI
ARTGRPAIIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDS
AINEHIEQMRLSATKAILERPDCIIVATVSAIYGIGDPSDYHQMILHLKEGDKTAQRDII
KRLTVMQYDRAELDFKRGTFRVRGDVIDIFPAESAELALRISLFDDEVETLHLFDPLTGR
TDHRVGRFTVFPSSHYVTPRATVLRACEAIKEELAARRMSFDLAGKLVEAQRIEQRTRFD
LEMLYEMGFCKGIENYSRHFSGKQPGEAPPTLIDYLPKSTLMIIDESHVTVPQIGGMYKG
DRARKENLVEYGFRLPSALDNRPLKFEEFERMMPQTVFVSATPGPYEASHAGQVVEQVVR
PTGLVDPQISVRPVTTQVDDLMSEITARAASNERVLVTTLTKRMAEQLTDYYTEHGIRVR
YLHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS
LIQTIGRAARNLNGLAILYADKITPSMERAIGETERRRQKQQAFNEANGIVPRGVQKKIK
DIIDGVYHEETGAPAPKAGKLHDPKQLARLIKDTEKQMLDAARDLRFEEAARLRDQLRQL
RDQLFVDED
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggccgacattgccaccttccccggttccccctatcgcctgcaccagcccttcccgccg
gcaggcgaccagccgactgccattgccggtctggtcgagggactgtccgacgggctggcc
ttccagaccctgctcggggtgaccggttccggcaagacctacaccatggccaacgtgatc
gcccgcaccgggcggccggccatcatcatggcgccgaacaagacactggcggcacagctc
tatgccgaaatgcgcgagttctttccggaaaacgccgtcgaatacttcgtcagctattac
gactattaccagccggaagcctacgttcccagccgtgacctctttatcgaaaaagactcg
gccatcaacgagcacatcgagcaaatgcggctgtcggccaccaaggccattctcgaacgt
cctgattgcataatcgtcgccacggtcagcgccatctacggtatcggcgacccgtccgat
taccaccagatgatcctgcacctgaaggagggcgacaaaactgcccagcgcgacatcatc
aagcgcctgaccgtcatgcagtacgaccgtgccgaactggacttcaagcgcggcaccttc
cgcgtgcgcggtgacgtcatcgacatctttccggccgaatcggccgagctggccctgcgc
atcagcctcttcgatgatgaagtggaaaccctgcacctctttgacccgctgaccggacgt
accgaccaccgggtcggccgcttcaccgtgttcccttccagccactacgtcaccccgcgc
gccaccgtgctgcgggcctgcgaggcgatcaaggaagaactggccgcccggcgcatgagc
ttcgatctggccggcaagctggtcgaggcgcagcgcattgaacagcgcacccgctttgac
ctggaaatgctctatgaaatgggcttttgcaaaggcatcgaaaactactcgcgccatttt
tccggcaagcagccgggcgaagccccgccgacgctgatcgattacctgcccaaaagcacg
ctgatgatcatcgacgagagccacgtcaccgtgccgcagatcggcggcatgtacaagggt
gaccgcgcgcgcaaggaaaacctggtcgaatacggcttccgcctgccctcggcgctggac
aaccgcccgctcaagtttgaagaattcgagcggatgatgccgcagaccgtttttgtctct
gccacgcccgggccgtacgaagccagccacgccgggcaggtggtggaacaggtggtgcgg
ccgaccgggctggtcgatccgcagatcagcgtgcgtccggtcaccacccaggtggacgac
ctgatgagcgagatcaccgcccgcgcggccagcaacgaacgggtgctggtcaccacgctc
accaagcgcatggccgaacagctgaccgattactacaccgagcacggcatcagggtgcgc
tacctgcactccgacatcgataccgtcgagcgggtggagatcatccgcgacctgcgcctc
ggcctgttcgacgtgctggtcggcatcaacctgctgcgcgagggactggacattcccgag
gtgtcgctggtagcgatcctcgacgccgacaaggaaggcttcctgcgcagcgagcgcagc
ctgatccagaccatcggccgtgccgcccgcaacctcaacggactggccatcctttacgcc
gacaagatcacgccgtcgatggaacgcgccatcggtgaaaccgaacgccgccgccagaag
cagcaggcgttcaacgaggccaacggcatcgtgccgcgcggcgtgcagaagaagatcaag
gacatcatcgacggcgtctaccatgaggaaaccggtgccccggcacccaaagccggcaag
ctgcacgatcccaagcagctcgcccgcctgatcaaggacaccgaaaagcagatgctcgac
gccgcccgcgacctgcgttttgaagaggctgcccgcctgcgcgaccagctccggcaattg
cgcgaccagttgttcgtcgacgaggactga
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