Laribacter hongkongensis: LHK_01201
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Entry
LHK_01201 CDS
T00884
Name
(GenBank) Exonuclease V alpha subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lhk
Laribacter hongkongensis
Pathway
lhk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LHK_01201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhk03400
]
LHK_01201
Enzymes [BR:
lhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LHK_01201
DNA repair and recombination proteins [BR:
lhk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LHK_01201
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
AAA_22
NAT10_TcmA_helicase
UvrD-helicase
SLFN-g3_helicase
nSTAND3
T2SSE
AAA_16
NACHT
FeS_assembly_P
UvrD_C
AAA_28
SP15_N
DUF3322
Motif
Other DBs
NCBI-ProteinID:
ACO74192
UniProt:
C1D6T5
LinkDB
All DBs
Position
complement(1157608..1159572)
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AA seq
654 aa
AA seq
DB search
MLTPDSLFAVLDTLVGTRRLRPLDRALARFLAGHVPDTPPAVLLATVLASHQLGRGHPAL
DLAAVHADPAATLGWADDGDTPDLTALPVFAGPLSGWLAQLESAACIDRPPADSGAPLVL
AGHNLYLRRYWQCEETVVEAIRARLPQRLAVPDDLSVRLDRLLADMRDADEAARRQTHWQ
SVAVALAARLGFCIISGGPGTGKTTTVVRLLGLLQGLTLDAGRTPLAIRLAAPTGKAAAR
LQDSIRQAVARLDPAVREHVPAEVSTLHRLLGPLPDSRHFRHHAGQPLPLDVLVIDEASM
IDLEMMAAVLSALPAHARLILLGDKDQLASVEAGAVLGSLCAGSRVDVQDPAQWAGSHEM
AAWLGAASGYAVKADGLPAGALTDHVVVLKKSHRFGDDSGIGELARAVNDGDASRAATVW
PRHADSIARLEPASRCIEQLALQGRSSGSPAGWQAASYRAYLEIMAAGDQGDPDGWARQV
LEAFNRFRVLCALRQGEEGVSGVNAAIEASLRTAGLLPAGRSEWYAGRPVMVLKNDYGLG
LMNGDTGIALPMPDATLRVCFALPDGRVRQVLPSRLTDVESAFAMTVHKSQGSEFSHTVL
LLPQHDSPILTRELVYTGITRARDRLTLVGSADIFRRAVSRRTVRHSGLAQRLG
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgcctgattccctgtttgccgtactggacaccctggtcgggactcgccgcctg
cgtccgctggaccgggcgctggcccgctttctggccggacacgtaccggacaccccgccg
gccgtcctgctggccaccgtactggccagccaccagctggggcgcggccatccggcgctg
gacctggccgccgtccatgccgacccggccgccacgctgggctgggccgacgatggcgat
acgccggacctgacggccttgccggtatttgccgggccgctgtccggctggctggcgcag
ctcgaaagtgccgcctgtatcgaccggccgccggccgacagcggtgcgccgctggtgctg
gccggccacaacctgtacctgcgccgctactggcagtgcgaggaaaccgtggtggaggcc
atccgcgcccgcctgccgcagcgcctggcggtgccggacgacctgtccgtccggctggac
cggctgctggccgacatgcgtgatgccgacgaagcggcccgccgccagacccactggcag
tcggtggcggtggcactggcggcccggctggggttctgcatcatttccggcggtccgggc
accggcaagaccaccacggtggtccgcctgctgggcctgttgcagggactgacgctggat
gccggcaggacgccgctcgcaatccggctggctgcccccaccggcaaggcggcggcccgc
ttgcaggattcgatccgccaggcggtggcccggcttgacccggccgtccgcgagcatgtc
cccgccgaggtgtcgaccctgcaccggctgctgggcccgctgccggacagccggcatttc
cgtcaccatgccggccagccgctgccgctggacgtgctggtgatcgacgaagcctcgatg
atcgaccttgaaatgatggccgcggtgctctcggccctgccggcccatgcccggctgatc
ctgctgggcgacaaggaccagctggcttcggtcgaggccggtgccgtgctgggcagcctg
tgcgccggcagccgggtggatgtgcaggatccggcgcaatgggccggcagccacgaaatg
gcagcctggctgggcgcggccagcggctatgcggtcaaggccgacggcctgccagccgga
gcgctgaccgaccatgtggtggtattgaaaaagagccaccgcttcggggacgacagcggc
atcggcgagctggcccgcgcggtgaacgacggcgatgcctcgcgggcggccaccgtgtgg
ccgcgtcacgccgacagcatcgcccggctggagccggcttcccgctgcatcgaacagctg
gcgctacagggccgcagcagtggcagcccggcaggctggcaggccgccagttaccgcgcc
tatctggaaatcatggccgccggcgaccagggcgatcccgacggctgggcgcgccaggtg
ctggaggcgttcaaccgcttccgggtgctgtgtgccctgcgccagggcgaggaaggcgtc
agcggcgtcaatgccgccatcgaggccagcctgcgcacagccgggctgctgccggccggt
cgcagcgaatggtatgccggccgcccggtgatggtgctgaaaaacgattacggactcggg
ctgatgaacggcgacaccggcattgccctgccgatgcccgacgccacgctgcgcgtgtgc
tttgccctgcccgacggccgggtacgccaggtattgcccagccggctgaccgacgtggaa
agcgcgtttgccatgacggtccacaagtcacagggatcggaattcagccacaccgtcttg
ctgctgccgcagcacgacagcccgatcctgacccgcgagctggtgtataccggcatcacc
cgcgcccgtgaccggctgacactggtgggcagtgccgacattttccggcgtgccgtcagc
cgccgcaccgtccgccacagcggactggcccagcggctgggctag
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