Laribacter hongkongensis: LHK_01202
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Entry
LHK_01202 CDS
T00884
Symbol
recB-1
Name
(GenBank) RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
lhk
Laribacter hongkongensis
Pathway
lhk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LHK_01202 (recB-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhk03400
]
LHK_01202 (recB-1)
Enzymes [BR:
lhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LHK_01202 (recB-1)
DNA repair and recombination proteins [BR:
lhk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LHK_01202 (recB-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
AAA_11
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACO74193
UniProt:
C1D6T6
LinkDB
All DBs
Position
complement(1159559..1163209)
Genome browser
AA seq
1216 aa
AA seq
DB search
MSNLMQALDPRRFPLHGLRLIEASAGTGKTFTIAALYLRLVLGARSEDDGLAFNAGGLLP
PQILVVTFTEAATEELRERIRSRLVEAARAFRQNDSDDAFLRGLLDDYPAGQRGRHAHQL
ELAAQWMDEAAIFTIHAYCQKMLRTHAFDSGSLFELTVNTDESALREQAVNDYWRRHFYP
LPRARLLPLQAIAASPAELGRLALPLLGRLPAGPADWTPVEAILAARRAEKAAWRQQGWL
EELARTLTGLRENKTVNGNKVRADSCQKWLDDLADWLARDSDDLPLAGKPFETARWRLTP
AGILDALKAGMSFDPPEPFFAVERLLQPALADTSLRAALLTHATRSIAAALAAEKSRRAE
IGFDDMIRGLAQALAPDSPNRERLAQALRQAYPVALIDEFQDTDPAQYAIFRTLYADAGP
EARLGLLMIGDPKQAIYAFRGADIFTYLAARHDTRPEQRYTLDTNWRSTTAMVGVVNQLF
CGSPEAGTVSETVFGRPDIPFQAVRAAGRSERLVQGGMPVPPLTLAWRQEAGNKDDYRQE
FARRAAEAITTLLNDSEAGLLADDGGFEPLAPRDIAVLVRDWQEAAAIRRALDLCSVRSV
YLSDKDSVFASQEAQDLVRWLDAVLYAEDNARLRLALATATLGLDYAGLDRLFNDEREWE
RTSERFRSYRQTWRQQGVLPMLLALLHDYRLPARLLARRDEGGERQLTNLLHLAERLQAD
AAGIDGEVGVLRHLERLTEQPDAAQESVLRLESEDARVRVVTLHKSKGLEYPLVFLPFLA
GGRALPDGRNGIFWHDGDGRLHVDLTGQDADGLAAMQRESAQEDMRLLYVALTRARHALW
IGLSPLSGTGDLLAGSAIGRLLQLDSDPGRLAGRLHALAQAGSDIRLDDTPPADPPPRYC
DSTPAPVLFPARRLTRRIARRWRIASYSALLTGPAQAGPPAAEDSAAANRIDDTAMPDSP
VLPIAGRTLAGFWRGPQAGIFLHGLFEWAAQQGFGRTCELAAERRDLLARRCQRRELAGW
IDFFDGWLPWVLTRPLPLNDASPVTLAALPPRSARAETEFWLGNPQLATTALDAAVSVAV
WPGHARPALLPQSLQGLFKGFIDLVFEHEGRFYVLDYKSNWLGDTPGSYHPDALRDEMLA
HRYELQGMLYLLALHRLLRARLGADYDPATRLGGFVCWFLRGTDGPGAGIVHLPADLALL
DRLDHLFACETPDADA
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacctgatgcaggcgctcgacccgcgccgctttcccctgcacggcctgcgcctg
atcgaggccagcgccggcaccggcaagacctttaccatcgccgccctctacctgcggctg
gtgctgggcgcccgttcggaagacgacgggctggctttcaacgcaggcggcctgctgccg
ccacagatcctggtggtaacgtttaccgaagccgccaccgaagagctgcgcgaacgcatc
cgcagccggctggtcgaagcggcccgggcctttcgccagaacgacagtgacgacgccttc
ctgcgcggactgctggacgactatccggccgggcagcgcggccgccacgcgcaccagctg
gaactggctgcacaatggatggacgaagccgccattttcaccatccatgcctactgccag
aagatgctgcgcacgcacgccttcgacagcggcagcctgttcgagctgacggtcaacacc
gacgaaagcgcactgcgcgagcaggccgtcaacgactactggcgccggcatttctatccg
ctgccgcgcgcgcgcctgctgcccttgcaggccattgccgccagcccggccgagctgggc
cgcctggccttgccgcttttggggcggctgccggccggaccggccgactggacgccggtc
gaggccatcctcgccgcccgccgggcggaaaaagccgcctggcgccagcagggctggctg
gaagagctggcgcgcacgctgaccggcctgcgcgagaacaaaaccgtcaacggcaacaag
gtgcgggccgattcctgccagaaatggctggacgacctggccgactggctggcacgcgac
agcgatgacctgccgctggcgggcaagccgttcgaaacggcgcgctggcgcctgacgccg
gccggtatccttgatgccctcaaggccggcatgtcgttcgatccgccggagccgtttttt
gccgtcgagcggctgttgcagccggcgctggccgacaccagcctgcgcgccgccctgctg
acccacgctacccgcagcattgccgcagcgctggccgccgaaaaatcccgccgggcggaa
atcggctttgacgacatgatccgcgggctggcacaggcgctggcgccggacagcccgaac
cgcgagcgtctggcccaggccctgcgccaggcctacccggttgccctgatcgacgaattc
caggataccgacccggcccagtacgccattttccgcacgctgtacgccgatgccggcccg
gaggcgcggctggggctgttgatgatcggcgacccgaaacaggcgatctacgcctttcgc
ggcgccgacatcttcacctatctcgccgcccgccacgacacccggccggagcagcgctac
accctcgacaccaactggcgctcgaccacggccatggtcggcgtggtcaaccagttgttc
tgcggttcgcccgaagccggcacggtatcggaaacggtattcggccggccggacattccc
ttccaggccgtgcgggccgccggccggagcgagcggctggtgcagggcggcatgcccgtg
ccgcccctgacgctggcctggcgccaggaagccggcaacaaggacgactaccgccaggag
tttgcccgccgggccgccgaagccatcaccaccctgctcaacgacagcgaagccggcttg
ctggccgacgacggcggattcgagccgctggccccgcgcgatattgccgtgctggtacgc
gactggcaggaagccgccgccatccgccgggccctggacctgtgcagcgtgcggtcggta
tacctgtcagacaaggattcggtcttcgccagccaggaagcgcaggacctggtgcgctgg
ctggacgccgtgctctacgccgaagacaacgcccgcctgcggctggcgctggccaccgcc
acgctgggcctcgactatgccgggctggaccggctgttcaacgacgaacgtgaatgggaa
cgcaccagcgagcgcttccgcagctaccgccagacctggcgccagcagggcgtgctgccg
atgctgctggccctgctgcacgactaccggctgccggcgcgcctccttgcccgccgcgac
gaaggcggcgaacggcagctcaccaacctgctgcatctggccgaacgcctgcaggccgac
gccgccggcattgacggtgaagtcggcgtgctgcggcacctggagcggctgaccgaacag
ccggatgccgcgcaggaaagcgtgctgcggctggaaagcgaagatgcgcgcgtgcgcgtg
gtcacgctgcacaagtccaaagggctggaatacccgctggtgttcctgccgtttctcgcc
ggtggccgcgcgctaccggacgggcgcaacggcattttctggcatgacggggacggccgg
ctgcacgtcgacctgaccggccaggacgccgacggactggccgccatgcagcgcgaaagc
gcgcaggaggacatgcggcttctgtatgtcgccctgacgcgggcgcggcatgcgctgtgg
atcggcctctcaccgctgtccggcaccggcgacctgctggccggcagcgccatcggccgc
ctgttgcagctggacagcgatcccggacgccttgccggccgcctgcacgcgctggcgcag
gcgggcagcgacatccggctggatgacacgccaccggctgatccgccgccacgctactgc
gacagcactccggcgccggtactgtttccggcccgccggctgacccgccgcatcgcccgc
cgctggcgcatcgccagttacagcgccctgctgaccggcccggcacaggccggcccgccg
gcagccgaggacagcgcggcagccaaccgcatcgacgacacggccatgcccgacagcccg
gtgctgccgattgccggccgcaccctggccggattctggcgtggtccgcaggcggggatt
ttcctgcacggcctgttcgaatgggcggcacagcagggctttggccgcacctgcgagctg
gctgccgaacgccgcgacctgctggcacgccgctgccagcgccgggaactggcaggctgg
atcgacttttttgacggctggctgccgtgggtgctgacccggccgctgccgctgaatgat
gcttcgccggtgacgctggcggccctgccgccccggtcggcacgggccgaaaccgaattc
tggctcggcaacccgcaactggcgaccacggcactggatgcggccgtgtctgtcgccgtc
tggcccggtcatgcccgcccggcgctgctgccgcagtcgctgcaaggactgttcaagggc
ttcatcgatctggtgttcgagcacgaaggccgtttttacgtgctcgactacaagtccaac
tggctgggcgacacgcccggcagctaccaccccgacgccctgcgcgacgagatgctggcg
caccgctacgagttgcagggcatgctgtacctcctggccctgcaccgcctgctgcgcgcg
cgactcggtgcggactacgatccggccacccggctgggcggctttgtctgctggttcctg
cgcggcaccgacggccccggtgccggcatcgtgcacctgcccgccgacctggccctgctg
gaccggctcgaccacctgtttgcctgcgagacgcccgatgctgacgcctga
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