Laribacter hongkongensis: LHK_02547
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Entry
LHK_02547 CDS
T00884
Symbol
rhlE4
Name
(GenBank) RhlE4
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lhk
Laribacter hongkongensis
Pathway
lhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHK_02547 (rhlE4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhk03019
]
LHK_02547 (rhlE4)
Enzymes [BR:
lhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHK_02547 (rhlE4)
Messenger RNA biogenesis [BR:
lhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHK_02547 (rhlE4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
SNF2-rel_dom
Shikimate_DH
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACO75528
UniProt:
C1DBX5
LinkDB
All DBs
Position
complement(2428144..2429517)
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AA seq
457 aa
AA seq
DB search
MMTFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPI
IARLRHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDP
QKADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQL
PKTRQTLLFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQKRRLLA
RLINERAMSQVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFKDGKL
RILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQKL
LEAIEKLTRQTLTPQHHAAAWPSWVPRPAAAAEERPALAQKRRTAPASEDSRDSSNAAVT
DDDELPAKPRRRVILPSYLREPVEVPALLMPPRYKRS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
gtgatgacgtttgccgagctgggtttgcccgcagaagtgcagcgtgcggttgatgaactt
ggctatgccgagccgacgccgattcaggcgcgtgccattcctgaagtactgacgggacgg
gacgtgctggctgccgcgcagaccggtaccggcaagacggccgcgtttaccctgcccatc
attgcccgcctgcggcactacgcgacgcatagcgtgtcgccggccatgcacccggtgcgc
tgcctgatcctgacgcccacgcgcgaactggccgaccagatcgccgcttcggtccagagc
tacaccaagtacctgccgctgcggcatacctgcgtgttcggcggcgtcaacatggacccg
caaaaagccgacctgatgcgcggcatggacatcgtcgtggccacacccggacgcctgctg
gaccatctggaacagaaaaccatccagctcaaccgggtggaaatgctggtgctggacgaa
gcggaccgcatgctcgacatgggcttcatcctggacatccgccgcatcctggcccagctg
ccgaaaacccggcagaccctgctgttctcggccaccttctcacccgagatcaaaaagctg
gcagccgaattccagcgtgatccggtcaccatcgaagtggcccggcaaaacaccacggcc
gccacggtcgagcaggccgtttatgccgtggatgccggacagaaacgccgcctgctggcc
cggctgatcaacgagcgtgccatgtcgcaggtgatcgtgttctgtcgtaccaagcagggc
gccgaccggctggcgcgcgagctgcgcaatttcgaccggctggacgccgaagccatccat
ggcgacaaggcccagcaggcccgcctggacacgctggcggcattcaaggacggcaaactg
cgcatactggtggctaccgacgtggctgcccgggggctggatgtcagcgacctgccgttc
gtggtcaacttcgacctgccgaattcgccggaagactatgtgcaccggatcggccgtacc
ggtcgtgccggtcagagcggcgtggccatttcgctgatggatgccgaagaacagaaactg
ctggaagcgattgaaaagctgacacgccagacgctgactccccagcatcatgccgctgcc
tggccaagctgggtgccgcgtccggccgctgctgccgaagagcgcccggcactggcacaa
aagcgtcgtactgctccggccagcgaagacagccgcgacagcagcaatgcagcggtgact
gacgatgacgagttgccggccaagccgcgccggcgggtgatcctgcccagttatctgcgt
gaaccggtcgaagtgccggcgctgctgatgccgccgcgttacaagcgcagttga
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