Laribacter hongkongensis: LHK_03130
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Entry
LHK_03130 CDS
T00884
Symbol
rhlE3
Name
(GenBank) RhlE3
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lhk
Laribacter hongkongensis
Pathway
lhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHK_03130 (rhlE3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhk03019
]
LHK_03130 (rhlE3)
Enzymes [BR:
lhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHK_03130 (rhlE3)
Messenger RNA biogenesis [BR:
lhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHK_03130 (rhlE3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ACO76108
UniProt:
C1D673
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All DBs
Position
complement(3040332..3042080)
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AA seq
582 aa
AA seq
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MSSISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFAL
PLLQRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKP
QIEALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLL
PAERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLT
HLVESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLR
VLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLL
ADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQRNKKKPHNKP
ARRADAPTLPMDAPEHDSGAPAPVAEAQPPRQRKPAPGQPNPAGKPQGAARDGKKPRPQN
QQNKKSGQPFEAREPRPPRENDGNRTDGQRKPRSGNSFESDPSVYQGQPVLLSHLMDLSG
ATPRPRRPQGGGHGGPGGSFKGGNKRHRGGGNGGGGDNRGNR
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgatttcctttgccgaccttcaactggtcgatccactgttgcgtgcgatcacc
gaggctggctacaccgaaccgaccccgatccagcgcgaggcgattgcgcccgtgctggcg
ggacgggatttgatggccgctgcccagacgggcaccggcaagaccgccggctttgccctg
ccactgttgcagcggctggcggcgacccacccgcacccgcatccggccggaaggccgcgt
gggctggtcctgacaccgacccgcgaactggccgcccaggtgggcgagtcgattgccacg
ctgggtacacacctgccgctgacttcgctggtgatcttcggtggcgtgcgcgtcaagccg
cagatcgaggcgctgacccagcgtgtcgacatcctgatcgccacgccgggccggctgatc
gatctggccaagcaggaggccgtggacctctcgggggtggaaatcctcgtgctggacgag
gccgaccgcatgctcgacatgggcttcatccgtgacgtgcgcaaggtgctcaagctcctg
ccggccgagcggcagaacctgttgttctccgccaccttcaacgacgacatcaaggcactg
gccgacaccttcctgcacgacccgcagctggtggaagtctcgccgcccaacagcaccacc
gaactggtgacgcaccacgtgcatctggtggaccgcaaccgcaagcgcgaactgctgacg
catctggtcgagtcgcgccagtggcagcaggtgctggtattcacccgtaccaagcacggc
gccaaccggctggccgaagtcctggcgaaaggcggcatcccggccgctgccatccacggc
aacaagagccagggcgcccgcacccgtgcgctgtccgaattcaaggacggcagcctgcgc
gtgctggtggccaccgacatcgccgcccgcggcatcgacatcagcgaactgccgcaggtg
gtgaactacgaactgcccaacgtgccggaagactacgtgcaccgcatcggccgcaccggc
cgtgccggcagcccgggcgaagccgtgtcgctggtgtgcgtggacgaactcaagctgctg
gccgacatcgaggccttcatcggccgtccgattccccagttcaccgaaccgggattcgag
gccgacctgagcgtgccgccgcagcccttgctgccgccgcgtcaccagcagggccgccag
gatggcgagggcggtgagccacgcgggcagcgcaacaagaaaaagccgcacaacaagccc
gcgcgccgggccgatgcaccgaccctgccgatggatgcgccggagcatgactccggagcg
ccggctccggttgcagaagcccagccgccgcgacagcgcaagccggctcccggccagccg
aatccggcaggcaagccgcaaggtgctgcccgcgacggcaagaagccgcgcccgcagaac
cagcagaacaagaagtccggccagccgtttgaagcccgcgagccgcgtccgccgcgtgaa
aacgacggcaaccggaccgatggccagcgcaagccgcgttcgggcaattcgttcgaaagc
gatccgtcggtctaccaggggcagccggtgctgctgtcacacctgatggacctgtccggt
gccaccccgcgtccgcgccgtccgcaaggcggcggccacggcggaccgggcggcagcttc
aagggcggcaacaagcgccatcgcggtggcggcaacggcggcggcggtgacaaccgcggc
aaccgctga
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