Lactobacillus helveticus H10: LBHH_0258
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Entry
LBHH_0258 CDS
T01959
Name
(GenBank) Transcriptional repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lhl
Lactobacillus helveticus H10
Pathway
lhl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBHH_0258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhl03400
]
LBHH_0258
Enzymes [BR:
lhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBHH_0258
DNA repair and recombination proteins [BR:
lhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LBHH_0258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
SLFN-g3_helicase
DUF7355
Y_Y_Y
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ADX69491
LinkDB
All DBs
Position
276276..279773
Genome browser
AA seq
1165 aa
AA seq
DB search
MRLTEILKEDQDLNNFIAKTKQVKNSLITGANAGAFSLLLKQIVTELKTPLILVEENENK
AQNLYGELSAILPDGSVQIFPVDATIATQTAVSSPDELSNRIEALNFLLSKKSGIVVTTP
QGLQYKLSDPQEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILD
VYPLDRENPVRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEA
IEQDMGDAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKKPSSLLEYLDKNGQIL
IDDLPLVKQAVETVDKQNTAFISDELKTGAMLPKQTLRNDFDQVLTKDKHYRIYFSLFQR
SMGRIRLGQMFNWQTREPAQFFSQMPLIKSELESYQKSGQTVVLQADNAKRAKQIDQTMV
DFGLNLPIVGEDEITEGKSQIVVAGYTSGFSLPSVKLVYLTERELFNKRPQRKKRIKTLE
NAQRLRNYTELKPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGDQLFVPADQL
SLVQKYVASEGKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPD
DDLQKQFEDAFPYAETLDQLRSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAI
QDNKQVAFLVPTTILAQQHYETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDL
VVGTHRLLSKDVEFKDLGLLIVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMS
MVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDGQVFYLHNRISDIDETV
EKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIE
DADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIA
MRDLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIKERKGKKTVKKSNAEIDLKLEAY
IPDSYIGDQEEKIEFYKKIKAVNNQEELDKIEDELIDRFGDYPAAVENLLAVAGLKVDAD
LAQVLNVLKKDNNTIKVEFNNAASHELEGPNIFRALEHVSLKARISMNQEKRMVILLQLP
DKMKNRVLFNELTTFLQAASEIVQR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttaacagaaatattaaaagaagatcaagacttaaataattttattgcaaaaact
aaacaagtaaagaattcactaatcactggcgctaatgccggtgcttttagtctgctttta
aaacaaatcgtaactgagttaaaaactccacttattttagtagaggaaaatgaaaataaa
gcacaaaatttatatggagagttaagtgcaattttgcctgatggcagtgtccaaatcttt
cctgtcgatgccactatcgctacgcaaactgcagttagttcaccagatgagttaagcaat
cgaattgaagccctcaattttttattaagcaaaaaatctgggatcgtagttacgactccg
caaggtttgcagtataagctatcagatccgcaagagtttgctcaggcaaaaaaagacttt
gaacctggtaaggaatatgaattaactgatctgaataaatggcttgtcagtttaggctat
aaaaaagaagctttagtagcgcgtcctggagaattcgctattcgtggcgatattttggat
gtatatcctttagatagagaaaatcctgtaagaattgaattctttggcgatgaaattgat
acgattaaggaatttgatttagcaactcagcgcagtcaaaaagaaattgatcatgttgaa
atttctgcagctcaagatcgggtattttccgttgaagctattaaaactgcggcagaagcg
atagaacaagatatgggggatgcacctgcaccagacaaggcagtcaaagaccattttacg
attgcacttgatgcattgaatgcagggggactgcctgataattatgcctttttggtagat
tatttaattaaaaagccaagcagcttattagaatatttagataaaaatggtcaaatctta
attgatgatttgcccttggttaaacaagcagtagagactgtagataagcaaaatactgcg
tttattagcgatgaactaaaaactggtgcgatgttgcctaagcaaacattgcgcaatgat
tttgatcaagtattaactaaagacaaacattatagaatatatttctctcttttccagcgc
agtatgggccgaattcgtttaggtcaaatgttcaattggcaaacgcgtgaaccagcgcag
ttcttcagccagatgcccctaattaaatccgaacttgaatcatatcaaaaatctggtcaa
acggttgtattgcaagctgataatgcaaaaagagcaaagcaaatcgaccagacaatggtt
gattttggcttaaatttgccaattgtaggcgaggatgaaattacagaaggcaaatcacaa
attgtagtagctggttatactagtggctttagcttaccttcagtaaaattagtttatttg
actgagcgtgaattatttaacaagcgcccacaacgtaaaaagagaatcaaaactttagaa
aatgcgcaaaggttacgtaattatactgagctaaaacctggagattatgttgttcatgtt
aatcatggtattggtcgctttgaaggaattaaaacgctagagaataatggcgtaaaacga
gactatattaccattacttatcaacatggcgatcaattatttgtgccagccgatcagctg
agtttggtgcagaagtatgtggcttccgaaggaaagacgccacatattaataagcttggc
ggcagtgaatgggctaagactaagcgcaaggttcaatctaaggttgaagatattgctgat
gatttgattgaactttatgctaagcgtgagtcggaaaagggctttgccttttcaccagat
gatgatctgcaaaaacaatttgaagacgcctttccgtatgcggaaactctggatcaattg
cgctcaattaaagaaatcaaagaagatatggaaaaaccgaagccaatggatcgtcttgtt
gtaggggatgttggctttggtaaaacggaagttgccttaagagcggctttcaaagcaatc
caagataataaacaagttgcttttttagtaccaacaaccattttggctcagcagcactat
gaaactattcaagatcgtttcaaagacttcccagttaacactgccatgctttctcgtttc
caaactcccgctgaatccaaagagatcattgaaggtcttaaagagggcaagatcgattta
gttgtaggtactcatagacttttgtccaaagacgttgagtttaaagatctgggattatta
atcgttgatgaggagcagcgctttggcgttaaacacaaagaacgattaaagcagttaaag
gctaatatcgatgtcttaacactcactgctacgccaattcctagaaccttgcatatgtca
atggttggtgtgcgcgatttatctgtgatggaaacgccacctcaaaacagatacccaatc
caaacttatgtgatggaacaaattccaagtgtagtaagggatgcatgtttacgcgaaatg
cagcgtgatggacaggtcttttatttacataaccgaattagcgatattgatgaaacggtg
gaaaaattgcaacaactgattcctaatgcgcgtattgctagtgctcatgggagaatgagt
caaaatcaattagaggatattttatatcgctttttgaatcgagaatttgatatcttggtt
accaccacgattattgaaacgggaattgatatgccaaatgtcaatacgatgattatcgaa
gatgctgatcattacggtttgagtcagctttatcagcttcgaggcagaattggccgtagt
gccagactagcttacgcatattttttgtatcaacctaacaaggtgttaactgaagttggt
gaaaagcggctagatgcaatccgtgattttactgaattaggttcaggttttaagattgct
atgcgtgatttatcgattagaggagccggcaatatgctcggagcccaacagcatggcttt
attgatagtgttggttatgatttgtattcacaaatgctgagtgatgcaattaaagaacgt
aagggcaagaagacagttaagaaatcaaatgccgaaattgatttaaagcttgaagcttat
attccagattcatatattggcgaccaagaagaaaagattgaattttacaaaaagattaaa
gcggtcaataatcaggaagaattagataaaattgaagatgaactaattgatcgttttgga
gattatcctgcagccgttgagaacttgctcgctgtagctggattaaaagtagatgcagat
ttggctcaagtcttaaatgtactgaagaaagacaataatactattaaggttgaatttaat
aatgctgcatcacatgaactagaaggccccaatatttttagagccttagagcatgtgagt
cttaaagcacgtattagtatgaatcaagaaaaaagaatggttattttattgcagctgcct
gataaaatgaagaatcgagttttatttaatgaattaactacattcttgcaagctgctagt
gaaatagtacaaagatag
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