Lacticaseibacillus huelsenbergensis: LHUE1_000659
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Entry
LHUE1_000659 CDS
T09416
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhn
Lacticaseibacillus huelsenbergensis
Pathway
lhn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHUE1_000659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhn03019
]
LHUE1_000659
03009 Ribosome biogenesis [BR:
lhn03009
]
LHUE1_000659
Enzymes [BR:
lhn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHUE1_000659
Messenger RNA biogenesis [BR:
lhn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHUE1_000659
Ribosome biogenesis [BR:
lhn03009
]
Prokaryotic type
rRNA helicases
LHUE1_000659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WFB39894
LinkDB
All DBs
Position
complement(735377..736888)
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AA seq
503 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QHIDKADRSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHP
QIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLF
SATMPAAIMRLTNKFMKSPVVVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLSTIKEQVEANDTEKYEAMAETLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPHRGRNNHGHGNNRGGGYKGGYKGKRREGGYQGNRDGRRNY
DKKRNFGDKRKNVKRNFKIRSGE
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcacagtcaggt
tttgaagaagcgaccccgattcaagcagagacgatcccactggttctggaaggcaaagat
gtgatcggtcaagcacagaccggtaccgggaaaacggcagcatttggcttgccgattctg
caacacatcgataaagctgaccggagtatccaagcactggtcatttccccaacccgggaa
ttggcgattcagacccaagaagaactttatcgtttaggtcgcgacaagaagatcaaggtg
caagctgtttatggtggcgctgatattcgccgccagatccgtcagcttgctgaccacccg
caaatcgtggtcggaaccccaggacggattcttgatcatatcgggcgtcataccttgaaa
ctggaacaccttgataccttggtattagatgaagccgacgaaatgctcgacatgggcttc
attgacgacattgaaaagattgttgaacagatgccgacagaacggcagacattgctgttt
tctgcaaccatgccggcagccattatgcgcttgaccaacaagttcatgaagagcccggtt
gttgttaagattaaggccaaggaactgactgctgacaccgttgaacaatactatgttcgc
gcaaaggactatgaaaagttcgatgtgatgacgcgcttgttcgacgttcaggatcctgat
ctggcattgatttttggccggaccaaacgccgcgttgacgaattaacccgcggcttgaag
gcacgtggttatcgcgctgaagggattcatggcgatttgacgcagcaaaagcgtatgagc
gtgttgcgccaattcaagagtggccaattggactttttggtggcgacggatgttgcggct
cgtggattagacatttccggcgtgacgcatgtttataactatgacattccgcaagatcct
gattcatatgtgcatcgtatcggccggaccggtcgtgcagggcacaaaggggtttcggta
acatttgtcacaccgaatgaaattgaatacctgcacacgatcgaagacttgacgaagaag
cggatgttgccgatgaagccgcctaccgctgaagaagcgttgatgggccagatttccagc
ggcttatccacgatcaaagaacaagtcgaagccaacgacaccgaaaagtatgaagccatg
gcggaaacgcttttggaaaactataccccgctacaattggtttctgcctacctcaaagca
gtcagcccggatgatgccagtgcggttccggtcaaaattacaccagaacggccactgcca
catcgcggtcgcaacaatcacggccacggaaacaatcgtggtggcggttataaaggcggc
tacaaaggtaagcggcgcgaaggcggctatcaaggcaaccgtgacggccggcgcaactat
gacaagaagcgcaacttcggcgacaaacgtaagaatgtcaaacgtaacttcaaaattcgt
tcaggcgaataa
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