Lacticaseibacillus huelsenbergensis: LHUE1_002106
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Entry
LHUE1_002106 CDS
T09416
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lhn
Lacticaseibacillus huelsenbergensis
Brite
KEGG Orthology (KO) [BR:
lhn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lhn03009
]
LHUE1_002106 (rlmD)
Enzymes [BR:
lhn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LHUE1_002106 (rlmD)
Ribosome biogenesis [BR:
lhn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LHUE1_002106 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Methyltransf_25
PrmA
MTS
Cons_hypoth95
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_11
Methyltransf_32
DOT1
PCMT
Methyltransf_4
REGB_T4
CMAS
Motif
Other DBs
NCBI-ProteinID:
WFB38572
LinkDB
All DBs
Position
2279409..2280770
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AA seq
453 aa
AA seq
DB search
MAQPAVTKNQDLEVTIQDLTYEGMGVAKVAGFPLFIEDALPGEKMQVHVLKVQKQYGFAK
VVKRLTDSPDRVAGADGAYIRTGIAPLSILAYPAQLKFKQRQIEELYKKAHLAIDVLPTI
GMKHPLGYRNKAQVPVRMANDELQTGFYKKHSHDLVPIEDFLIQDPKIDHAIVVVRDLLR
KYKVPAYDERTNRGVIRNIMVRRGHATHQMMIVLVSRTWQVPHLKDIVEEITLALPEVTS
VVVNLNDKRNNVILGRKSKTIYGQDYLLDKLLGSEFQISPVSFYQVNPVQTEVLYTQAIE
AAGLTGKETVIDAYSGIGTISLTMARHAKHVYGVEVVESAVRDAQANAARNHIKNVTFEV
GKAEDVIQKWKDADLPVDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQ
LLAEFGYTAKQTQPVDMFPQTQHIESITALTLD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttggcccaaccagctgttaccaagaatcaggatctggaagttaccattcaggatctcact
tatgaaggcatgggcgtcgcaaaagtcgctggctttccactgtttatcgaggatgctttg
cctggcgaaaaaatgcaggtgcacgtgctgaaagttcaaaaacaatacggctttgccaag
gtggtcaaacgtttaaccgattcgcctgatcgagtcgcgggcgcagacggtgcttatatt
cgcacagggattgcgccgctgtcgattttggcttatccggcgcaactgaagttcaaacag
cgccaaatcgaagaactttataaaaaagcccacttagcgattgatgttttgcccaccatt
ggcatgaagcatccgctcggttatcgcaacaaagcgcaggtgccggtccgcatggccaac
gatgaattgcaaaccggtttttataaaaaacacagccatgatctggtgccaattgaagat
tttctgattcaggatcctaaaattgaccacgccattgtggttgttcgggatcttttacga
aaatacaaggtgccagcatatgatgagcggaccaaccgcggcgttattcggaacatcatg
gttcgccgcggtcacgccacgcaccagatgatgatcgtcttggtatcgcgcacatggcag
gtgccacacctgaaagatattgtcgaagaaattacgttggcgttgccggaagtcacaagc
gttgtggtgaatttaaacgataaacggaataatgtcatccttggccgcaagtcaaaaacg
atttatggtcaggattatcttttggataaactattaggcagcgaatttcagatttcgccg
gttagtttttaccaagtgaatccggttcaaaccgaagtcctttatacccaagcaattgaa
gcggcgggattgactggcaaagaaaccgtcattgatgcttattccggtatcggcaccatt
tcgctcaccatggcgcgtcatgccaaacacgtttatggcgttgaagtggttgaatcagcg
gtgcgcgatgctcaggcaaatgccgcgcgaaaccatattaaaaatgtgacgtttgaagtt
ggcaaggccgaagatgtgattcagaaatggaaagacgctgacttgccggtagacgtcctg
atggttgacccgccgcgtaaaggtttggacaagagcttcattgatgcggtgggttacatg
aagccgccgaagatcgtttacgtttcttgcaatcccgcaacattagcacgcgacttgcaa
ttgttggcagaattcggctacaccgccaagcagacacaaccggtggacatgtttccccag
acgcagcatattgaaagtattacggctttgacgctcgattaa
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