Paucilactobacillus hokkaidonensis: LOOC260_103570
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Entry
LOOC260_103570 CDS
T03598
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho03420
Nucleotide excision repair
lho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOOC260_103570
03430 Mismatch repair
LOOC260_103570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_103570
Enzymes [BR:
lho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOOC260_103570
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOOC260_103570
MMR (mismatch excision repair)
Other MMR factors
LOOC260_103570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
Viral_helicase1
DEAD
AAA_30
NACHT
AAA_16
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAP84931
UniProt:
A0A0A1GWW5
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All DBs
Position
complement(378712..381024)
Genome browser
AA seq
770 aa
AA seq
DB search
MTEKSERQIEQNRVDDVTKQVSAQIKASEDLFEQAHHETRMVDQNYSDNASVNLYEVDDA
METNAMIEQQRQLVARSFESETILKRQLDTLSNLKSSPYFGRIDIKDSDEPEAESLYIGV
ASLMNDDKSDFLIYDWRAPVAGIYYNGNLGAVKYSTPAGPQSTELVKKRQFTIKNGHITT
MFDTNETVGDEMLQAALGEQNDQYMQNIVATIQKEQNDIIRDTDSDLLLVQGVAGSGKTS
AILQRIAYLLYHSRASLNADQIVLFSPNRLFSNYISEVLPSLGERNMRQVTLAEFLSRRF
EGLDVQTLFERYENEQTNGIINQAAQNYLESAACMQSVRNYCRSLTPQQMKFSNILFEGR
IFFTADHIRDIFAKLPQNMAIADKTIATKNSLIKELKRRIKDEAKSDWVSEEVSQLNNED
LHDLLGKKKSDEFETEDELLDYVSNRLATKRLRIVYDAIYNNYFFDPYAQYSDFLNQSQP
DNVADNVAAESWQQIIANFKQEIEYHQISLMYCTSLLYLRDLVTGSGQNRQLEYVFIDEM
QDYSIAALIYLKHVFPKAKFTILGDSEQALFKEIEPPHQLLDRLSTALKAKKPNLIVLNR
SYRSTTEITNFAKSLLPDGDQILPFNRHGDLPRIILRYSQADATNALLDEVKAQAEAFET
VAILTKNAVQAHAVYQQLRQFGNVNLLKDTDRVLPSGILIMPIYLAKGLEFDAVIAYDVS
ETNYSDPRATGILYTIASRAMHQLTLLSIGAACPIIAADQEKLLQIEHSI
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
ttgacagaaaaaagtgaacgtcaaattgaacaaaatcgcgtcgatgacgtaaccaaacaa
gtatccgctcaaattaaagctagtgaagatctgtttgaacaagctcatcatgaaactcgc
atggttgatcaaaactatagcgacaacgcatccgttaacttgtacgaagttgatgatgcc
atggaaaccaacgctatgattgaacaacaacggcaattggttgcccggtcatttgaaagt
gaaactattttaaaacgtcagttagacactttatcaaacttgaaaagctctccttatttt
ggtcggatcgatattaaagattccgatgagccagaagctgaatcgctttatattggtgtg
gcctcattgatgaacgacgataaatctgattttttaatctatgattggcgtgcaccagtc
gctggaatctattataacggcaatcttggtgctgttaaatattcaacaccagctggtcca
caatcaactgagctagtaaagaaacggcaatttaccattaaaaacggccatataactacc
atgtttgataccaatgaaacagttggtgatgaaatgctgcaggctgctttaggcgaacaa
aacgatcaatacatgcaaaacattgtggccactattcaaaaggaacaaaacgacattatt
cgtgataccgatagcgacttgttattggtccaaggagttgctggtagtggtaaaacctca
gctattttacaacgaattgcttatttgctctatcacagtcgtgcttcattaaatgctgat
caaatcgttttgttttctcctaatcgactttttagtaactatatttctgaagttttaccc
agtctaggtgagcgaaatatgcgccaggtaacattagccgaatttttatctcgtcgattt
gaaggcttggatgtacaaactttatttgaacgttatgaaaacgagcaaaccaatggaatc
ataaatcaggcagctcaaaattacttagaaagtgctgcgtgtatgcagtccgttagaaat
tattgccgtagtttaacgcctcagcaaatgaaattttctaacattttatttgaaggccgg
atttttttcacggctgaccacattcgtgatattttcgcaaaactaccacaaaatatggct
attgcggataaaaccattgctacaaaaaatagtctcattaaggaactcaaacggcgaatt
aaagatgaagctaaatctgattgggtctctgaagaagttagtcaactaaacaatgaagat
cttcacgacctactgggtaagaaaaagtcagatgaatttgaaacagaagatgagctattg
gattatgtatcaaatcggcttgccactaaacgactacgtattgtttacgatgccatttat
aataattacttttttgatccgtatgcacaatattctgattttttgaatcaatcacaaccg
gataatgttgccgataatgttgccgctgagtcatggcaacaaattattgctaattttaaa
caagaaattgaataccaccaaatttcattgatgtattgtacatcattattatatttacgt
gatttggttactggttctggacaaaaccgacaacttgaatatgtctttattgatgaaatg
caagattactcgattgcagcactgatctatcttaaacacgtctttccaaaggccaaattc
actattttaggtgatagcgaacaggcactgtttaaagaaattgagccgccacatcaacta
ctagatcgattaagtactgcattgaaggctaaaaagcctaatttaattgtactcaaccgc
agctatcgttccacaaccgaaattaccaactttgccaaatccttattaccggatggtgat
cagatcttaccatttaatcgccacggggatttaccacgcattatcctacgttattcacag
gcggatgcaacgaatgcattacttgatgaagtaaaggctcaagctgaagcatttgaaact
gttgctattttaaccaaaaatgcagttcaagcacatgctgtttatcagcaattacgccaa
tttggtaatgtgaatctattaaaagatacggatcgcgtgttaccgtccgggattttaatt
atgccaatttacttggcaaagggattagagtttgatgctgtgattgcctacgatgtttcg
gagaccaactattctgacccacgagcaacgggaattttatacaccattgcttcacgtgcg
atgcatcagctgactcttttgagtatcggcgctgcttgcccgataattgctgctgatcag
gaaaaactgttacagattgaacatagtatttaa
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