Paucilactobacillus hokkaidonensis: LOOC260_105310
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Entry
LOOC260_105310 CDS
T03598
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOOC260_105310 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lho03021
]
LOOC260_105310 (rpoB)
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_105310 (rpoB)
Enzymes [BR:
lho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOOC260_105310 (rpoB)
Transcription machinery [BR:
lho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOOC260_105310 (rpoB)
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOOC260_105310 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAP85088
UniProt:
A0A0A1GW70
LinkDB
All DBs
Position
548703..552302
Genome browser
AA seq
1199 aa
AA seq
DB search
MAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQSDSYQWFLDEGLREMFDDIMPIDDFQG
NLSLEFVDYQLLDPKYTVDEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
DQGTFIINGAERVIVSQLVRSPGIYFNETLDKNGRPSFGATFIPNRGAWLEYETDAKGIS
YVRIDRTRKVPLTELVRALGFGSDDEIIEMLGNNESLSLTIDKDIHKNNEDSRVEESLKD
IYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGRYKTNKKLDLKTRLLNQTLAETLA
DPETGEVIAQKGDIVTKEVMHDLAPYLDQDDFKTITYNPSEEAVVTEPVELQKIMVYSKV
DPEREVPMIGNGHIDLKLKHIQPADILASMSYFFNLQEGIGNTDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDSATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA
RVNKYGFIETPYRRVSWDTHMVTDRIDYLTADEEDNFVIAQANSPLKDDGAFVDDTVMAR
SKSENIETSIENIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLLDPHS
PLVGTGIEYKAAHDSGVALLAKYPGTVEYVDAREIRVRREDSALDTYKLMKFRRSNGGKN
YNQRPIVKLGDQVDASEILADGPSMENGELALGQNPLIAFMTWQGYNFEDAIAINERLVR
DDVYTSIHIESYESEARDTKLGPEEMTRELPNVGEDALKDLDDDGIVRVGAEVQDGDILV
GKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKIFTRENGDELSP
GVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPQEDMPYMPDGTPVDIMLSPMGVP
SRMNIGQVIELHLGMAARKLGIHVATPVFDGANDDDVWEAVKEAGLPADGKTVLYDGRTG
EAFDNRIAVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMK
VLDGKHQEIELRDMDEDGDDVVNVDALSKYAEKQAQQNQAPVQDAQVKGQAPQEETKQD
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttggccggacatttagttaaatacggtaaacaccgtacccgtcgtagttactcacgaatc
aaggaagttcttgatttgcctaacctgatcgaaatccaaagcgattcttatcaatggttc
ttggatgaaggtctccgggaaatgtttgatgacattatgccgattgatgatttccagggt
aacttgtccctagaatttgttgattatcaattattagacccgaagtatacagtggatgag
gcacgtgaacatgatgccaattattctgctcctttgcatgttactctacgtttaacaaac
cacgaaactggtgaaattaaatcgcaagatgtattctttggtgacttcccattaatgact
gatcaaggaacttttatcattaatggtgcagaacgggtaatcgtttcacaattggttcgt
tcgccaggaatttactttaatgaaacattagataaaaatggtcgtcctagttttggggca
acttttattcctaaccgtggagcttggcttgaatatgaaacagatgccaagggaatttcg
tatgttcggattgaccgaactcgtaaggttccattgacagaattagttcgtgccttagga
ttcggttctgacgatgaaattattgaaatgcttgggaataacgagtcattgtcattgacg
attgataaagatattcacaagaataacgaagattcacgtgttgaagaatcgttgaaagat
atttacgaacgactccgtccaggtgaacccaaaacagctgactcatcacgtagtctgtta
acagcacgtttctttgatccaaaacgatacgatatggctcctgttggccgttataagact
aataagaagcttgatttgaagactcgtttattaaaccaaacgttagctgaaacactggct
gatccagaaactggtgaagtaattgctcaaaaaggtgacattgtcactaaagaagtgatg
catgatttagcaccatatttggatcaagatgacttcaagacgatcacatataatccatct
gaagaagctgttgttacagaaccagtcgaattacaaaaaattatggtttactcaaaggtt
gatccagaacgtgaagtaccaatgattggtaacggtcatattgacttaaaactcaagcat
attcaacctgctgatatcttagcttcaatgagttacttctttaacttacaagaaggtatt
ggtaacacagatgatattgatcacttgggtaaccgtcgtattcgttcggttggtgaatta
cttcaaaaccaattccgaatcggtttatcacggatggaacgtgttgttcgtgaacggatg
tcaatccaagatagcgctactgtgacaccacaacaattgatcaacattcgaccagttgtg
gcttcaatcaaggaattctttggttcatcacaactatcacaattcatggatcaaactaac
ccacttggcgaactaacgcataaacgtcgtctatcagccttgggacctggtggtttgact
cgtgatcgtgccggttatgaagttcgtgatgtgcactatacgcattacggccggatgtgt
ccgattgaaacacctgaaggccctaacattggtttgatcaatagtctgtcaagctatgcg
cgggttaacaagtatggattcatcgaaacaccatatcgtcgtgtttcttgggatacacac
atggttactgatcgaattgattatttaaccgccgatgaagaagataactttgttattgca
caagctaactcgccattgaaagatgacggtgcgtttgttgatgataccgttatggctcgt
tcaaaatcagaaaatattgaaactagcattgaaaacattgactatatggatgtttcacct
aaacaagtagtttctgttgccactgcatgtattcctttcttggaaaacgatgattctaac
cgtgccttgatgggtgccaacatgcaacgtcaagcggttcctttgctcgatcctcattca
ccactagttggtactgggattgaatataaagcagcccatgactctggtgttgctttgcta
gctaaatatcctgggacagttgaatatgttgatgcacgtgaaattcgtgttcgacgtgaa
gacagtgctttagatacctacaaattaatgaaattccgccgttcaaatggtggtaaaaac
tacaaccaacgtccaattgttaaattaggcgatcaagtcgatgctagtgaaatcttagct
gatgggccatcaatggaaaacggtgaattagcattaggccaaaacccattgattgccttc
atgacatggcaaggttataacttcgaagatgccattgcgattaatgaacgtttagttcgt
gatgacgtttatacttcaattcatattgaatcatatgagtcagaagcacgtgatacaaaa
cttggaccagaagaaatgactcgtgaacttcctaacgtcggtgaagatgctttgaaagac
cttgacgatgatggaattgtccgtgttggtgctgaagttcaagatggtgatatcttagtt
ggtaaggttactcctaagggtgtgactgaattatctgctgaagaacgtttactccatgct
atctttggtgaaaaatcacgtgaagttcgtgatacatcattgcgggtacctcatggtggt
ggcggaatcatccaagatgttaaaatctttactcgtgaaaacggggatgaattatcacct
ggtgttaacatgatggttcgtgtctacattgctcaaaaacgtaagcttcaagttggagat
aaaatggctggacgtcatggtaacaaagggactgtctctgtggttattccacaagaagat
atgccatacatgccagatggaacaccagttgatatcatgcttagccccatgggtgtgcct
tcacgtatgaatatcggtcaagttatcgaattgcatttaggaatggctgctagaaagtta
ggcattcacgttgcaactccagtctttgatggtgccaatgatgatgatgtttgggaagct
gttaaagaagccggcttaccagctgatggtaagactgtgctttatgacggccgtactggg
gaagcatttgataatcgtatcgccgttggtgtgatgcattatatgaaacttgcccacatg
gttgatgataagattcatgctcgttcaatcggaccttactcattagttacccaacaacca
cttggtgggaaagcacaatttggtggccaacgtttcggtgaaatggaagtttgggcattg
gaagcttatggtgctgcttatacactgcaagaaattttgacgtacaagtcagatgatgtg
gtcggccgtgttaaaacttatgaagccattgttaagggtgaaccaattccaaagcctggt
gtaccagaatcattccgtgtgctggtaaaagaattgcaagctcttggattggacatgaaa
gtgcttgatggcaaacatcaagaaatcgaactccgtgatatggatgaagatggtgacgat
gttgtcaatgttgatgcattgagtaaatatgctgaaaagcaggcacaacaaaatcaggca
ccagtacaagatgctcaagttaaaggccaggcgccacaagaagaaactaagcaagattaa
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integrated database retrieval system
