Paucilactobacillus hokkaidonensis: LOOC260_105320
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Entry
LOOC260_105320 CDS
T03598
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOOC260_105320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lho03021
]
LOOC260_105320 (rpoC)
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_105320 (rpoC)
Enzymes [BR:
lho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOOC260_105320 (rpoC)
Transcription machinery [BR:
lho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOOC260_105320 (rpoC)
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOOC260_105320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAP85089
UniProt:
A0A0A1GVQ8
LinkDB
All DBs
Position
552345..555983
Genome browser
AA seq
1212 aa
AA seq
DB search
MIDVNNFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVLDGGDTPLEKKQLLSERDYRDKKLEYGNKFSAEMGAEAIRKLLE
EVDLKKEAAELKEQLKEASGQKRTRAVRRLDILEAFLKSGNKPDWMVMDVVPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLRMNQMGLPVP
MAMELFKPFIMKELVKRDLASNIKNAKRKIDRKDDDVYDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRVHPLVCEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAGHIL
APRDGKPVVTPSQDMVIGNYYLTTEDAGREGEGMIFKDSDEARTAYQNGYVHLHSRVGVL
ASSMDAKPFTTEQKSKVLMTTVGKLIFNDILPTDFPYLNEPTNDNLTDNISDKYFLAPGE
DLKAHFADAPLIPPFKKGFLSDIIAEVYKKYKVTATSLLLDRMKDLGYDESTISGLTVGI
SDITDLKEKPEIIAKAHKEVATVSKQFRRGLITDDERYERVIGIWNDAKDEVQQKLIDSM
DLHNPINMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPIISNFREGLTVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLKVTSITDGNEMIEPLY
DRILGRYTMKSVANPDTGAQIIGKNMMIDEDAAQAIIDAGVTEVTIRSAFTCNTKHGVCE
RCYGRNAATGDKVEAGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNEDITQGLPRIQEI
VESRNPKGKSEITEVTGTVESIEENPAERTKEVTIKGETDTRTYTLPIISRMRVAEGDFI
HRGTALNDGSIDPKELLQVRDVLSTETYLLGEVQKVYRMQGVEILDKHVEIMIRQMMRKV
RIMDPGDTDVLPGALMDIDEFRDDNYKTLIAGGVPATGRPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMAEYRGIKPKEVGVASTEGVYS
ISDIEKQMKEKE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataattttgaaagcatgcaaatcggtctggcatcaccagataagatt
cgcagttggtcgtatggggaagtaaaaaagcccgaaacaatcaactaccgaactttgaaa
ccagaacgtgacggcttgtttgatgaacgaattttcggacctactaaggactgggaatgt
gcttgtggtaagtacaagcggattcgttataaaggtgttgtgtgtgatcgttgtggggtt
gaagttactcgttctaaagtacgtcgtgaacggatgggccatattgaattggctgcacct
gtaactcatatttggtactttaagggtattccaagtcgaatgggtcttgtactagacatg
agcccacgcgctttggaagaaatcatttactttgcatcatatgttgtcttagatggtggt
gatacaccacttgaaaagaaacaactattgtcagagcgtgattatcgtgataaaaagttg
gaatatggcaacaagttcagtgctgaaatgggtgctgaagctattcgaaagttgcttgaa
gaagttgatcttaaaaaagaagctgctgaattaaaggaacaattgaaagaggcttctggc
caaaaacggacgcgtgccgttcgtcgtttggacattttggaagcattcctcaagtcaggt
aacaagcctgattggatggtaatggatgttgtcccagttatgcctccagatctacgacca
atggttcagttggaaggtggccgttttgctacatctgacttgaatgatttgtaccgtcga
gttatcaaccgtaataaccgtctcaaacgtttactagatttgaacgctcctggaattatt
gttcaaaacgaaaagcggatgttacaagaggccgttgatgctttaattgataatggtcgt
cgtggacgtccagttgccggtcccggtaaccgtccattgaagtcactatctcatttatta
aagggtaagcaaggacgattccgtcaaaacttacttggcaagcgggttgattattctggc
cgttccgttatcgatgttggtccttcattacgaatgaaccaaatgggccttcctgtgcca
atggcaatggaattgttcaaaccatttatcatgaaagaattggttaaacgggatttggct
tctaacattaagaatgctaagcgtaagatcgatcgtaaagatgatgatgtgtatgatgtt
ttggaagatgtgattaaggaacacccagtgttacttaaccgagcacctacattgcatcgt
ttgggaattcaagcttttgagccagttttggtatcaggaaaagcaatgcgagttcatcca
cttgtgtgtgaagcttacaatgccgattttgatggtgaccaaatggccattcacgtgcct
ttatctgatgaagctcaagcagaagcacggttattaatgcttgctgcgggtcatattcta
gctcctcgtgatggaaaaccagtggttacaccatcacaagatatggttatcggtaactat
tacctgacaactgaagatgctggtcgtgaaggcgaaggaatgatcttcaaggatagtgac
gaagcccgtacagcatatcaaaatggttacgttcatttgcattcacgtgttggtgtcttg
gcttcttcaatggatgctaagccatttactactgaacaaaagagtaaggtattgatgaca
actgttggaaaattgattttcaatgatattttaccaacagatttcccatacctgaacgaa
ccaactaacgataacttaactgataatattagtgacaagtatttcttggctcctggtgag
gatctaaaagcacattttgctgatgcaccattgattccaccattcaagaaaggctttcta
tcagatattatcgctgaggtttacaagaagtataaggttacggccacttcattattgttg
gaccgaatgaaagatttaggttatgacgaatcaactatttctggcttaacagtgggtatc
tcagatatcactgatttaaaagaaaaacctgagattattgctaaggcacataaagaagtt
gccaccgtttctaagcaattccgtcgtggattgattactgacgatgaacgatatgagcgt
gttatcggtatttggaatgatgctaaagatgaagtacaacaaaaactgattgatagcatg
gatctgcataaccccatcaatatgatgagtgattccggtgcccgtggtaatatttcaaac
tttactcaattagcaggtatgcgtggattgatggctgctcctaatggtaaaatcatggaa
ttaccgatcatttcaaacttccgtgagggattaactgtgttggaaatgtttatttctacc
catggtgcccgtaaaggtatgactgatacggcccttaaaacggccaactcaggttacttg
actcggcgattagtcgatgttgcgcaagacgtcattgttcgtgaaaaggattgtggaact
gatcgtggtttgaaagttacatcaattactgatggtaatgaaatgatcgaacctttatat
gatcgtattttaggccgatacacgatgaagtcagttgctaatcctgatacgggtgcccag
atcattggtaagaacatgatgattgatgaagatgctgcgcaagcaattatcgatgctggt
gttactgaagttactattcgttcagcattcacatgtaatactaaacatggtgtttgcgaa
cgttgttacggccgtaatgctgctactggtgacaaagttgaagccggtgaagctgtcgga
accgttgctgctcaatcaattggtgaaccaggaacgcaattaacaatgcgtaacttccat
actggtggtgtggctggtaacgaagatattactcaaggacttcctcgtattcaagaaatt
gttgaatcacgaaaccctaaaggtaaatctgaaattactgaagttacaggtacagttgaa
tcaatcgaagaaaatccagctgaacggaccaaagaagttacaatcaagggtgaaacagat
accagaacgtacactttgcctatcatttctcggatgagagttgctgaaggtgacttcatc
catcgtggaactgcgcttaatgatggatcaattgatcctaaagagttgttgcaagttcgt
gatgtcttatctactgaaacttacctgttaggtgaagttcagaaggtttaccgtatgcaa
ggggtagaaattctagataagcacgtggagatcatgattcgtcaaatgatgcgcaaggtt
cggatcatggatcccggtgatacagatgtattgccaggtgccttgatggatattgatgaa
ttccgtgatgataattataagacactgattgctggtggcgttccagctactggccgtcca
gtaatcttgggtatcacgaaagccgcacttgaaactaacagtttcttgtcagctgcttca
ttccaagaaacaacccgtgtgttaactgatgctgctattcgtggcaaaaatgacccatta
gttggtttgaaggaaaatgttatcatcgggaagattattcctgctggtacaggaatggct
gagtatcgtggtattaagcctaaagaagttggcgttgcgtcaactgaaggggtttactca
attagcgatattgagaaacagatgaaagaaaaagagtag
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