Paucilactobacillus hokkaidonensis: LOOC260_105640
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Entry
LOOC260_105640 CDS
T03598
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOOC260_105640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lho03021
]
LOOC260_105640
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_105640
Enzymes [BR:
lho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOOC260_105640
Transcription machinery [BR:
lho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOOC260_105640
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOOC260_105640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
BAP85121
UniProt:
A0A0A1GXG2
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All DBs
Position
573437..574381
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AA seq
314 aa
AA seq
DB search
MIEFEKPNIHKVDESNNYGKFVVEPLERGYGTTLGNSLRRILLASLPGAAITSIQIDGVL
HEFSTVEGVTEDVTQIILNMKKVSLKIDTEEDKTLEIDVKGPADVTAGDIQTDGDVTVLN
PDLHIATVADGAELHIQMTADKGRGYVSADDNKARMDDLPIGVLPIDSIYTPIERVNYTV
ESARVGQRNDYDKLTLDVWSDGSITPSESVSLAAKILTEHLTMFVDLTDTAKNAEIMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRAGINSVQELTDRSEADMMKVRNLGRKSLEEVK
AKLIDLGLSLRQED
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaatttgagaaacctaacattcataaagttgatgaaagtaataactatggcaag
tttgtcgtagaaccactcgaacgcggttatggaacaactcttggaaattcactccgtcga
attttacttgcgtcacttcctggtgcggctattactagcattcaaattgatggtgtgtta
catgagttttcgaccgttgagggcgttactgaagatgttacacagattattttgaacatg
aaaaaggtatctttgaaaattgatactgaagaagacaaaacattagaaattgatgttaaa
ggcccagccgatgttactgccggtgatattcaaactgacggtgatgtaactgtgcttaat
cctgatcttcatattgctacagttgctgatggggctgaacttcatattcaaatgacggcc
gataagggtcgtgggtatgtttcagctgatgataataaagctcgcatggatgatcttcca
atcggtgttttgccaattgattccatctataccccaatcgaacgcgtaaactatacagtt
gaaagtgctcgtgttggtcaacgtaacgattatgataagttaacgcttgatgtttggtca
gatggttctattacaccgagtgaatcagttagtttggctgctaaaattttaacagagcat
ttaacaatgtttgttgatctaacagatactgctaaaaatgctgaaattatggtcgaaaaa
gaagagacccataaagaaaaaatgttagaaatgacaattgaggaattggacttgtctgtt
cgttcgtacaactgtttgaagcgtgccggtattaattccgtacaagaattaactgatcgt
tcagaggctgatatgatgaaggttcgtaatttaggacgtaagtcactggaagaagtaaag
gctaagttaattgatttaggcttatcacttcgccaagaagattaa
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