Paucilactobacillus hokkaidonensis: LOOC260_108720
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Entry
LOOC260_108720 CDS
T03598
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOOC260_108720 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_108720 (uvrA)
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOOC260_108720 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOOC260_108720 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
DnaJ_CXXCXGXG
nSTAND1
AAA_29
AAA_21
SMC_N
RsgA_GTPase
AAA_16
AAA_25
nSTAND3
Anti-TRAP
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
BAP85412
UniProt:
A0A0A1GSY7
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Position
890160..892673
Genome browser
AA seq
837 aa
AA seq
DB search
MAVQHRETIPENIEVTGAHVNNLKNIDVKIPLNAFVAITGRSGSGKSSLAMGVLYAEGAR
RYLDALSTYTRRRISQVGKAAVDQVKHLPSALALRQRPTVPGVRSTVGTMTESLNVLRLM
FSRLGSHRCPNGHQIPPTLEVAENMGYVTCPVCHVTFMAFGAEDFAFNSQGACPDCNGTG
KIRQIMPERLIPDQTLTLRQGAVASWRLPGRNFMIYVAQQIGIPIDTPFNQLSAAQQKQV
WSGKKEQYAINIPSKTGKIFHMDNAQYENAFAAVEDSLATTTNERAIQRLNRFYDFTTCP
TCHGNRFDPKLMTTKLADLNIAQVSQMTMTELMDFADKILDWLPDKMQPIGKNLVGEFSN
SLQPILDLGLDYLTLDRPGETLSTGELQRIQLGRTLRSETTGVLYILDEPSIGLHPANVA
GLIKILRQLVSMGNSLVVVDHDTSIISAADYVIEIGPAAGNDGGTIVAQGTVAEIKRESQ
SLIAPFLTGTATLRDRPIIANEQPTENKQLQVTVNDRYNLHNVTAKFLLNRLNVVSGYSG
AGKSTLILDSLIPALKAANAGSALPKYVKSVATGGIKNIVTVDSVPVGKNVRSTVATYTG
ILDELRKLFAQTDEAQQAQFNASHFSYNVKAGACPTCNGTGSISLDIQYLPDMVEECPTC
HGKRYNDETLQIKWNNMSIADVLALDVNGAIKVFEQTPKIKSMLSQLQSMGLGYLHLGES
TPALSGGEAQRLKLVSHMGRKQDETLFVFDEPSVGLHPLDIQTLIKVFDQLLAKGATIIT
IEHDLDILANADYIIDLGPKGGQLGGQIVGSGTPQELANNQNSETGKFLKQHLQLFQ
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcaacatcgtgaaacgattcctgaaaatattgaagttactggtgcacacgtt
aataatttaaaaaatattgatgtgaaaataccattaaatgcatttgtcgctatcactgga
cgctctggatccggcaaatcttcattagcaatgggggttttgtatgctgaaggagctaga
cgttatttagatgcgttatcaacctatactagaagacgaatcagtcaagttggaaaggcg
gcagttgaccaggttaaacatttgccatctgcgttggcactgcgtcaacgacccactgtt
cctggagttcgctctacagtgggaacgatgactgaaagcttaaatgtattacgattaatg
ttttcacgactgggctcgcatcggtgtcccaatggtcatcagattccaccaacgcttgaa
gtagccgaaaatatggggtacgtcacgtgtccagtttgccatgtcacgtttatggctttt
ggggcagaggactttgcttttaattcacagggggcttgcccggactgtaatggaacagga
aaaattagacagattatgcctgaaaggctgattccagaccagacgttaaccctacgacaa
ggagcggtggcgtcatggcgtttgcctggccgtaattttatgatctatgtggcgcaacaa
attggtattccaattgatacaccatttaatcaattgagtgcagcacagcaaaaacaagtt
tggtccggaaaaaaggaacaatatgcgattaatattccttcaaagacagggaaaattttt
catatggataatgcacagtatgaaaatgcgtttgcggcagttgaggacagcttggcgact
actactaacgaacgtgcgattcaaagactgaatcgattctatgatttcaccacctgtcca
acttgccatggtaatcggtttgatcctaaattaatgacaactaagcttgcagatttaaat
attgcacaagtatcacaaatgacaatgactgagttaatggattttgcagataagattctg
gactggttgcccgataaaatgcaaccgattggtaaaaatttagttggtgaattttcaaat
agtcttcagccaattttagatttaggactagactatttaaccttggaccggcctggtgaa
acgttatccactggtgaactacagcgaattcagctgggtagaacgttacgcagtgaaaca
accggtgtattgtacattttggatgagccatcaattgggttgcatccggccaatgttgct
gggttaatcaaaattttgcgtcaattagtatctatgggcaattccttggtagtagtcgat
cacgatacaagcatcattagtgcggccgattatgttattgaaattggaccagcggctggt
aatgatggtggtacgattgttgcacagggaacggtagctgaaattaaacgagaatcacaa
tcactaattgcgccatttttaactgggacggcgacattacgagaccgaccaatcattgct
aatgagcaaccaactgaaaataagcaattacaagtgacagttaacgatcggtataattta
cataatgttactgctaaattcttattaaatcgattgaacgttgtttctggttattcaggt
gctggtaaatcaaccttaattttagatagcttaattcccgcattaaaggctgccaatgcc
ggtagtgctctgccgaaatatgttaagtcggttgcgactggtggaattaagaatatcgtg
acggtcgattcggtaccagtgggtaaaaatgttcgttctacagttgcgacttatacaggc
atattagatgaactacgaaaactatttgcacaaactgatgaagcgcaacaagcacaattt
aatgcaagtcatttttcatacaacgttaaggcaggtgcttgcccaacctgtaatgggact
ggatcgatttcattagatattcagtatttaccagatatggtggaagagtgtcccacttgt
catggcaaacggtataatgacgaaacgctgcaaattaaatggaacaacatgagtattgct
gatgttttggccttggatgttaatggtgccattaaagtatttgaacagacaccaaaaata
aaatcaatgttgagtcagttgcaatcaatgggattaggttacttacatttaggtgaaagc
acgccggcattatcaggcggtgaagctcaacgattaaagttagtgtcgcatatgggacga
aagcaagatgagacgctatttgtatttgatgaaccatccgttgggttgcatccattagac
attcaaacgttgattaaggtatttgatcagttattagccaaaggggccaccattattacc
attgaacacgatctagacattttagctaacgctgattacattattgatttagggcctaag
ggtggacagctgggtggtcaaattgttggtagcggcacaccgcaagagctggcaaataat
caaaatagtgaaacaggcaagtttcttaagcaacatttacaattattccaataa
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