Paucilactobacillus hokkaidonensis: LOOC260_111240
Help
Entry
LOOC260_111240 CDS
T03598
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lho
Paucilactobacillus hokkaidonensis
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lho03032
]
LOOC260_111240
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_111240
Enzymes [BR:
lho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LOOC260_111240
DNA replication proteins [BR:
lho03032
]
Prokaryotic type
DNA Topoisomerases
LOOC260_111240
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LOOC260_111240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
AHJR-like
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BAP85663
UniProt:
A0A0A1GXM4
LinkDB
All DBs
Position
complement(1120643..1122769)
Genome browser
AA seq
708 aa
AA seq
DB search
MAVKSEKPAATKKPKKRAKSKIKKKLVIVESPSKAKTIEKYLGRSYKVVASIGHIRDLPK
SRMGVDIENNYQPDYISIRGKGDVIKELRKDAKNAKEVYLASDPDREGEAIAWHVSNILK
LDENSKNRVTFNEITKDAVKEAFKEPRNIDMDLVDAQQARRILDRLVGYSISPILWKKVK
KGLSAGRVQSIALSLIIERENQIRAFKPQEYWTIESEFKKDRTKFGASFYGVKGKKQDLA
DNAAVQKILGQLDRKGDFLITKVVKKERKRSPQPPFTTSTMQQDANRKLNFRTRKTMMAA
QHLYEGINIGKGGAVGLITYMRTDSTRISLIAKHEASKYIHEKYGAEYAATKPVKGKLPE
GAQDAHEAIRPTSVYRTPAEMKQYLNNDQYKLYNLIWSRFMASQMTPEVQDTMAVTISQN
NVDFRANGSQTKFAGFTKIYNNGGEKDNILPDLSEGDNVKLAKTDPSQHFTQPPARFSEA
NLIKALEENGVGRPSTYAPTLDTIQRRYYVKLVSRRFEPTELGEIVNTIIHEQFPEIVNV
KFTAQVEGELDSIETGNQDWVKVVDSFYQPFSKEVEHAEEEVEKIEIKDELAGIDCEICG
APMVVKMGRYGKFFACSRFPDCRNTKAIVKDIGVICPKCHEGNVVERKSKRNRVFYGCSR
FPECDFVSWDKPIGRDCPKDGHFLVEKKVKGGKQVICPNGDYEEALQK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggctgtaaaaagcgaaaaaccagcagcaactaaaaagcccaaaaaaagagctaaatca
aaaataaagaaaaaattggtgattgttgaatcaccttcaaaagcaaaaacgattgagaaa
tatcttggtcgtagttacaaagtagttgccagtattggacacatccgtgatttgccaaaa
agtcgaatgggtgttgatattgaaaacaattatcagcctgactacatttcaattcgtggt
aagggtgatgtcattaaagaactacgtaaggatgctaaaaatgccaaagaagtttatcta
gcatctgacccggatcgtgaaggcgaagcaattgcttggcacgtttctaatattttgaag
cttgatgaaaatagtaaaaatcgagttacatttaacgaaattactaaggatgccgttaaa
gaagcttttaaagaacctcgaaatattgatatggatttggtagatgcacaacaggcacgt
cgaattttagatcgattggttggatactcaattagtcctattttatggaaaaaggttaaa
aaaggactcagcgctggtcgggttcaatctattgcacttagtttgattatcgaacgtgaa
aatcaaatcagagcctttaaaccgcaagagtattggaccatagaatctgaatttaaaaag
gaccgtactaagtttggtgcatcattttatggtgttaagggtaaaaagcaagatttagca
gataatgccgctgttcaaaaaatattagggcagttagatcgtaaaggtgattttctaatt
accaaagtggtcaaaaaagaacggaaacggtcaccacaaccgccatttactacttcaaca
atgcaacaagatgctaaccgtaagttgaatttcagaactagaaaaacaatgatggccgcg
cagcatttgtatgaaggaattaatattggcaaaggtggagcagttggattgatcacctat
atgcggaccgattcaactagaatttcattaattgcaaagcacgaagcctctaaatatatc
catgaaaaatatggagctgagtacgcagcaacaaagccagtaaagggtaagttaccagaa
ggtgcccaagatgcacatgaggctatccgaccaacatctgtttatcggactcctgcggaa
atgaaacaatatctgaataacgatcagtataaattatacaatttaatttggtcacgattt
atggctagtcaaatgacaccagaagtacaagatacaatggcagtcactatctcacaaaat
aatgttgacttcagagccaacggatctcaaactaaatttgctggatttacgaagatctat
aataacggtggtgaaaaagacaacattttaccggaccttagtgaaggcgacaatgttaaa
ctggcaaaaactgatccaagtcaacatttcacgcagccaccagcacgtttttctgaagct
aatttgattaaggcactggaagaaaatggagttggacggccatcaacctacgctccaaca
ctggacacaattcaacgacggtattatgttaaattagtttcccgccgttttgaaccgaca
gaattaggtgaaattgtgaacacaattattcacgaacagtttccagaaattgtgaacgtt
aaattcaccgctcaagtcgaaggtgagctggacagcattgaaactggaaatcaggattgg
gttaaagttgtagattcattctatcaaccattttctaaggaagttgaacatgccgaagaa
gaggttgaaaaaattgaaataaaagatgagttagctggcattgattgtgagatctgtggc
gctcccatggtagttaaaatgggacgttatggtaagttctttgcttgttctcgttttcct
gattgtcgtaacacaaaggcaattgttaaagatattggcgtgatctgtcctaagtgtcac
gaaggtaatgttgttgaacgtaagtcaaagcgcaaccgtgtgttctatggctgttctcgt
ttccctgaatgtgattttgtttcttgggacaaaccaattggtcgcgattgtcctaaagat
ggtcatttcttagttgagaagaaagttaagggcggcaaacaggttatttgtccaaacggc
gactatgaagaagcactacaaaaatag
DBGET
integrated database retrieval system
