Paucilactobacillus hokkaidonensis: LOOC260_111610
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Entry
LOOC260_111610 CDS
T03598
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LOOC260_111610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lho03021
]
LOOC260_111610
Transcription machinery [BR:
lho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOOC260_111610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
BAP85700
UniProt:
A0A0A1GUQ5
LinkDB
All DBs
Position
complement(1158358..1159512)
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AA seq
384 aa
AA seq
DB search
MAKSTKKSKAKELVISNLEDFDPKKYDAAVGKLIRDYKKEKEIKYDDLTDKVATPFGLEA
DGMDNLIQNVEDAGISVVDENGEPDPRALKVAEKVSKKALDDTSAPAGVKINDPVRMYLK
EIGRVNLLKAEEEVQLALRIEQGDDSAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEG
NMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQR
QLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDA
TSPADHAAYELLKEQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIR
QIEAKALRKLRHPSRSKQLKDFLE
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaagcacaaaaaagagtaaggcaaaagaattagttatttcaaatctagaagat
tttgatcccaaaaaatatgatgccgctgtcggtaagttaattcgtgattataaaaaagaa
aaagaaattaagtatgatgacttaaccgataaggttgctacaccatttggtctagaagca
gatggaatggacaatctaattcaaaacgttgaagatgctggtatcagtgttgttgacgag
aatggtgaaccggatccacgtgctttaaaagttgctgaaaaggtttctaaaaaggcacta
gatgacacgtcagcaccagccggggttaaaatcaacgatcctgttcggatgtatttgaag
gaaattgggcgagttaacctattaaaggctgaagaagaagttcagttagctttgcgaatt
gagcaaggtgatgatagtgccaagcaagagttagcagaagccaacttacggttagtcgtt
tcgattgctaagcgttacgtaggtcgtggtatgcaatttttggatttaattcaagaaggt
aatatggggctaatgaaagccgttgagaagtttgattaccgtaagggatttaaattctcg
acatatgctacttggtggattcgccaagccattacacgtgccattgctgaccaggctcgt
acgattcggattccagttcacatggttgaaaccattaataaattgattcggattcaaagg
caattgttgcaagatttaggtcgggaaccaacgccggaagaaattggcgctgaaatggat
atgccgactgaaaaagttcgtgaaattctaaaaattgcacaagagccagtttcattggaa
acaccaattggtgaagaagatgactctcatttgggggactttattgaggatcaggatgct
accagtccagcagaccatgcagcgtatgaattactcaaagagcagttggaaaatgtactg
gatacattgaccgaccgtgaagaaaatgttttgagacttcgttttggcctggacgatggc
cggactcgaacacttgaagaagttggtaaagtattcggtgtaactcgagaacgaattcga
caaatagaggcaaaggcattaagaaaattacgccatccatcacgctcaaaacagttgaag
gactttttagagtaa
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