Paucilactobacillus hokkaidonensis: LOOC260_113140
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Entry
LOOC260_113140 CDS
T03598
Name
(GenBank) ribonuclease Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
lho
Paucilactobacillus hokkaidonensis
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lho03016
]
LOOC260_113140
Enzymes [BR:
lho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
LOOC260_113140
Transfer RNA biogenesis [BR:
lho03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
LOOC260_113140
Prokaryotic type
LOOC260_113140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_4
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
BAP85850
UniProt:
A0A0A1GV21
LinkDB
All DBs
Position
complement(1309247..1310188)
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AA seq
313 aa
AA seq
DB search
MQIEFLGTGAGSPSKQRNVTSIALRLLEERNAIWLFDVGEATQHQILRTTIRPRKIEKIF
ITHLHGDHIFGLPGLLSSRSFQSGEGALTIYGPRGVADFVKTSLRVSETKLGYPIKFVEL
TDAGVIFEDDTFQVSCEKLDHKIECFGYRVVERDHPGELQVEKLRALNVPSGPLYGQLKA
GKTVKLPDGRVLDGKDFIGAAQPGRIVTILGDTRKTDASAVLAKDADVLVHESTFAKGEG
KMAHNYYHSTSIQAAQIAKKAHAKRLLLTHISARYTGKLANELAYQARDIFENTRVVNDL
DVFEVPFGSSKTD
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattgaatttttgggtaccggtgctggttcaccaagtaaacaaagaaatgttacc
agtatcgcactgcgcttactggaagaacgaaatgctatctggctgtttgatgttggtgaa
gcaactcaacaccaaattttacgaacaacaattcgtccgcgaaaaatcgaaaaaatattt
attactcatttacatggggatcatatctttgggttacctggattgttgagctcacgatca
tttcaaagtggtgaaggggcgttaactatttatgggcctcgaggcgttgctgattttgtt
aaaacaagtttgcgtgtcagtgaaaccaaattggggtatccaattaaatttgtagaatta
actgacgctggtgtgatctttgaggatgatacgttccaagtaagctgtgaaaaattggat
cacaagattgaatgctttggttatcgagtggttgaacgcgatcatccgggtgaattacaa
gtagaaaaattacgagcactcaatgttccatctgggccgttatatgggcaattaaaggct
ggaaaaacggttaaattacctgatggacgggtgctagatggcaaagactttattggtgct
gcgcagccaggcagaattgtcactattttaggtgatacccgtaaaacagatgctagtgct
gtgttggcaaaggatgccgatgtcttggttcatgaaagtacttttgctaagggtgagggt
aaaatggcacataactattaccattcgactagcattcaggcagctcaaatagccaaaaaa
gcacatgctaaacggttattattgacgcatatttctgctcggtatactggtaaattggcc
aatgagttggcttatcaagcacgtgatatttttgaaaatacacgagtggttaatgattta
gatgtatttgaagtaccatttggtagttctaaaacagattaa
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