Paucilactobacillus hokkaidonensis: LOOC260_113610
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Entry
LOOC260_113610 CDS
T03598
Name
(GenBank) hypothetical protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LOOC260_113610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_113610
Enzymes [BR:
lho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LOOC260_113610
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LOOC260_113610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
nSTAND3
AAA_12
AAA_29
NPHP3_N
DEAD
UvrD_C
SLFN-g3_helicase
T2SSE
AAA
HTH_IclR
RsgA_GTPase
AAA_16
AAA_22
AAA_7
AAA_28
Mg_chelatase
Rad17
TsaE
AAA_23
Cnd3
DUF4926
P8
AAA_25
NTPase_1
nSTAND_NTPase5
MeaB
Motif
Other DBs
NCBI-ProteinID:
BAP85897
UniProt:
A0A0A1GUD9
LinkDB
All DBs
Position
complement(1357187..1359637)
Genome browser
AA seq
816 aa
AA seq
DB search
MDNSINLFDGPSEPSFLIGKVLTTFFASTDNFYKVLLVQPMENNFDWSQDEIVVTGNFGE
VNEESAYRFEGKLVDHPKYGQQFQSVTYHNAQPTTTEGLINYLSGEQFTGIGKKTATKIV
DLLGTSAIDEIVKDTSVLKPLKLRPNLVKVLVDNLTESKGMDQVIIGLNDFGFGSSLSTA
IFEKYRDETLEVIAKNPYQLAEDIDGISFKRADQVAEQIHIDSDDTRRINAAILQVLDEV
TMQSGDTYTTAKPLLTEALRLLEDSRNIAIDPQKIADQLIELTKLNKLVAQENRIYPSAL
FNAEWQIAQHLYRLVSDQPIKVDDKQVSKVIKQIEHQLDIDYDESQEQAINSAMKSHVFL
LTGGPGTGKTTIINGIVAAFAKLHDYSLDINEYKDTPFPVLLAAPTGRAAKRMSETTGLP
ASTIHRLLGLNGREQPTEMNVNDLTGALLIVDELSMVDTLLFKTLLKAVPSSMQVVLVGD
KDQLPSVGPGQIFHDLLNFDRLPKQELNQIYRQSAESSIIPLAHAIKTGIMPADFTSAFP
DRSFIPCRTDQVAGVIEQVVERAKQHAFSAAQVQVLAPMYRGNAGINRLNELVQNVFNPL
DETKKKEVEFRGEHFRIGDKVLHLVNSPENNVFNGDIGTIVSIELGVKGVKGPKTDQITI
DFDQTEVTYSRNEWQRLTLAYCISIHKSQGSQFEMVILPLVRQFSRMLQRNLLYTAITRA
KSKLILVGDPKAFEISIQNESVNRNTSLNLRLIDVFKGDPVPDSANKLSVVAPPKEATVV
ESKEAKPISYTLTMPLIQNGQVDPMIGMHGIKPTDF
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggacaactcaattaacttatttgatggtccaagtgagccgtcttttttaattggaaag
gttttgacaactttttttgccagtactgataatttttataaagtcttacttgtgcaacca
atggaaaataattttgattggtctcaagatgagattgtggttactggtaactttggtgaa
gttaatgaagaaagcgcatatcgatttgaaggtaaactagttgatcaccccaaatatggc
caacagtttcaatctgttacttaccataatgctcagccaacaaccacggaaggacttatc
aattatctttctggtgaacagtttacgggtattgggaaaaaaaccgcaactaagatcgtt
gatttgttaggtaccagtgcgattgatgaaatcgtaaaagatacttctgtattgaaacca
ttaaagttgcgccctaatttagtcaaagtgttagttgataatttaactgagagcaaaggg
atggatcaagttattatcggcttaaacgatttcggctttggtagctctttatcgactgct
atttttgaaaaatatcgggatgaaacactagaagtaattgccaagaacccatatcaatta
gcggaagatattgatggaattagttttaaacgtgccgatcaagttgctgagcagattcat
attgatagcgacgatacacgtagaattaatgcggctattttgcaggtgctcgatgaagta
acaatgcaaagcggtgatacttatacaacggccaaaccgttacttacagaagcattacgg
ctacttgaagatagtcgtaatatcgcaattgacccacaaaaaattgccgatcaattaatt
gaactaacaaagttaaataaattagttgcccaagaaaatcgaatctatccaagtgctttg
ttcaatgccgaatggcaaattgcacaacacttgtatcgattggtatcggatcaaccaatt
aaagtggacgataaacaggttagtaaagtaatcaagcagattgaacaccaattagatatt
gattacgatgaatcacaagagcaggcaattaattcagcgatgaaatcgcatgttttcttg
cttacagggggtccaggaaccggtaagacgactattataaatggtatcgtggcagcattt
gctaagttgcatgactactcgttggatatcaatgaatataaggataccccatttccagtt
ttattagctgctccgactggtcgggccgccaaacgaatgagcgagactacaggattgcca
gcaagtaccattcatcgtctactaggattaaatggtcgtgaacagccaacagaaatgaat
gtcaatgacttaactggcgcactcttgattgttgatgaactctcaatggttgacacactg
ctctttaaaacgttattaaaggctgtacctagttctatgcaagttgtgctagttggtgat
aaggatcaattaccatcagttggtccaggacagattttccatgatttattaaactttgat
cggttgccgaaacaagagttaaatcaaatttatcgacaatccgctgaatcttctattatt
ccattagctcatgcgattaaaacgggaatcatgcccgctgattttacaagtgcatttcct
gatcggtcatttattccatgccgaacagatcaagtcgcaggagtaattgaacaagtcgtt
gaacgggccaagcaacatgcttttagtgccgcacaggttcaagtattagcacccatgtat
cgtggtaatgcgggaattaatcgtttaaatgaattggttcaaaacgtgtttaatccttta
gatgaaacgaagaaaaaagaagttgagtttcgcggcgaacattttcgaatcggggacaag
gtgttacatttagtcaatagccctgaaaataatgtgtttaacggtgatattggcacgatt
gttagcattgaacttggtgtaaagggcgtcaaaggtcctaaaactgatcaaattacaatt
gattttgatcaaacggaggtaacttattcacgtaatgagtggcaacgattaacgttggcc
tactgtatttccattcataaatcgcagggtagtcaatttgaaatggtgattttaccactg
gtacgccagtttagtcggatgctgcagcgcaatctattgtatacagcaattactcgtgct
aaaagtaaattaattttagtgggcgatcctaaggctttcgagattagcatccaaaatgaa
tcagttaatcggaatacttcattgaatttaaggttaattgatgtgtttaagggtgatcca
gtgcctgattcggcgaataaattatcggttgtagcaccacctaaagaagcaacagtggta
gaaagtaaagaagcaaagccaatttcatatactttaacgatgcccttaattcaaaatggt
caagttgacccgatgattgggatgcatggaattaagccgactgatttttaa
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