Paucilactobacillus hokkaidonensis: LOOC260_115310
Help
Entry
LOOC260_115310 CDS
T03598
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lho
Paucilactobacillus hokkaidonensis
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lho03019
]
LOOC260_115310
03009 Ribosome biogenesis [BR:
lho03009
]
LOOC260_115310
Enzymes [BR:
lho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOOC260_115310
Messenger RNA biogenesis [BR:
lho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOOC260_115310
Ribosome biogenesis [BR:
lho03009
]
Prokaryotic type
rRNA helicases
LOOC260_115310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAP86041
UniProt:
A0A0A1GZZ2
LinkDB
All DBs
Position
complement(1481480..1482832)
Genome browser
AA seq
450 aa
AA seq
DB search
MADSFATFKLQPFLQAALKDLGFQAPTPVQEKIIPVIQAGRSVVGQSQTGSGKTHAFLLP
IFNRIDATKDQVQVVITTPSRELAYQIYEASKQLVSFSSDEFRIHNYVGGTDKQRQIAQL
KNHQPQIVIGTPGRIADLVSAGALDIHQAHEFVVDEADMTLDMGFLAQVDQIAGALPEEL
QMMVFSATIPEKLRPFLRKYMDNPVVEEIPVTSVISPTVDNWLLSTKSKSKNELIYHLLT
IGEPYLVLVFANTKERVEEINHYLQTKDLKVAMIHGGIAPRERKRVMRQVHNLDFQFVVA
TDLAARGIDIEGVSMVINDGIPNDLEYFIHRVGRTGRNGMKGTAITLYEPGDDEKVTELE
QMGIKFKPKEIKNNEIVDTYDRRRREKRKPKHDQLDSTMKGYVKKTKKKVKPGYKKKIKA
AISEQDRQKRKLALRHDMRKARRDKKSSNR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcatttgcaacatttaagttgcaaccatttctacaggccgcattaaaagac
ttgggatttcaagcaccaacccctgttcaggaaaaaataattccggttattcaagcagga
cggagcgtagtcggacagtcacaaactggaagtggtaaaacccacgcgtttttgttacca
atttttaatcgaattgatgcaactaaagatcaggttcaagtagttataaccacgcctagt
cgtgaattagcatatcaaatctatgaagcatcaaaacaattagtttcattttcatctgat
gaatttcgaattcataattatgttggtgggacggacaagcaacggcagattgctcagttg
aaaaatcatcagccacaaattgttattggaacacccgggagaattgctgatttagttagt
gctggagcgctagatatacaccaagcacatgaatttgtggttgatgaagccgatatgacg
ttagatatgggcttcttggcacaggttgatcaaattgctggagcattaccggaagaactt
cagatgatggttttttcggccacaatcccagagaaattgcgaccatttttacgtaaatat
atggataatcctgttgttgaagagattccagtgacatcagtcattagcccaaccgttgat
aattggctgctttccactaaaagtaagagtaaaaatgaattaatttaccacttgctgaca
attggtgaaccatacttagtgttggtttttgcaaatactaaggaacgcgttgaagaaatt
aatcactatttgcaaactaaagacttaaaggttgccatgatccatggtggcatcgcacca
cgcgaacgaaaacgagtgatgcgtcaagttcataaccttgattttcaatttgttgttgcg
accgacctagcagctcgtggaattgatattgaaggagtgtcaatggtcattaatgacggc
attcctaacgacttagagtattttattcatcgagtagggcgaaccggtcgtaatggcatg
aaggggactgcaatcacgctgtatgaacctggcgatgatgaaaaggttacagagctagaa
caaatgggaattaaattcaagcccaaagagattaagaacaacgaaattgttgatacttat
gatcgtcgtcggcgagaaaaacgcaagcccaagcatgatcagttagatagcacgatgaag
ggttacgttaaaaaaaccaagaaaaaggttaagccaggttataaaaagaagattaaggca
gctatttctgaacaagatcggcaaaaacgtaaattggccttacgtcatgatatgcgtaaa
gcccgtcgagataagaaaagtagtaaccgttga
DBGET
integrated database retrieval system
