Lactobacillus helveticus R0052: R0052_01555
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Entry
R0052_01555 CDS
T02217
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lhr
Lactobacillus helveticus R0052
Pathway
lhr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lhr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R0052_01555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhr03021
]
R0052_01555
03400 DNA repair and recombination proteins [BR:
lhr03400
]
R0052_01555
Enzymes [BR:
lhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R0052_01555
Transcription machinery [BR:
lhr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R0052_01555
DNA repair and recombination proteins [BR:
lhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R0052_01555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AFR21323
LinkDB
All DBs
Position
288844..292497
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI
SPKLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAICELLK
KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDAFKNSGNKPEWMVMDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGIASNIKNAKRKIDREDDDIWDVLEDVIKERPVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS
ADAMPKKPWPQGHEHGIFITTYGKLVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGQ
DIHDKIDEVGDDLIATPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT
IGMNDVPEIKDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA
QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRNDDCGTDRGITVSAIMEGDEMIE
PLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGVTHVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTRSYSVPYTASVAVSEG
DYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLTRQML
QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRNMEPEADVKKPDSV
YSIGDIEKQMKEKEQSK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataaatttgaaagtatgcaaattggtcttgcatcacctaacaagatc
agaagctggtcatatggtgaagttaagaagcctgaaaccatcaactaccgtactttaaaa
cctgaaaaagatggtctatttgatgaaagaatctttggaccaactaaagactggtcatgt
gcctgtggtaaatataaaggtgttagataccgcggtatcgtttgtgaccgttgtggtgtt
gaagttacctcttcaaaagtaagaagagaacgtatgggacacattgaattagctgcccct
gtaactcacatttggtacttcaaaggtatcccatcaagaatgggcttagtattggacatt
tctccaaaattgcttgaagaagttatctactttgctgcatatatcgtaattgatccaggt
gatactgatcttgagcctaagcaattattgaccgaagcagaatatcgtgaacaaaaggct
aaatatggcaaccgttttgaagctaaaatgggtgctgaagctatttgcgaattgcttaaa
aaagttgaccttgacaaagaagttaaggatttgaagaaagaacttcaaactgcaactggt
caaaaacgtacacgtgctatcagacgtttggacattttggatgcatttaagaactctggt
aataagcctgaatggatggttatggatgctgttccagttattccaccagatcttcgtcca
atggttcaacttgaaggtggacgtttcgctacatcagatttgaacgatttatacagacgc
gttattaaccgtaataatcgtttgaagagattgcttgatttgaacgctcctaacatcatc
gttcaaaacgaaaagcgtatgcttcaagaagctgttgatgctttaattgataacggtcgt
cgtggtcgtccagttgttggaccaggtaaccgtccacttaagtcactttcacacatgctt
aagggtaagcaaggtcgtttccgtcaaaacttgcttggtaagcgtgttgactactcaggt
cgttcagttatcgatgtttcaccaaaattgaaattctatcaatgtggtgttcctcgtcca
atggctttggaattgtttaagccgtttgtaatgcacgaattggttaaacgtggtattgct
tctaacattaagaatgctaagcgtaagattgatcgtgaagatgatgatatttgggatgta
cttgaagatgtaattaaggaacgtccagttcttttgaaccgtgcacctactcttcaccgt
ttgagtattcaagcatttgaaccagttttggtaccaggtaagtcaatcagacttcaccca
ttagcttgtgaagcctacaacgccgacttcgatggtgaccagatggccatccacgtacca
ctttcagatgaagctgttgctgaatctcgtttacttatgcttgctgctcaccacatcttg
gctcctaaggatggtaagccaatcgttactccatcacaggatatcgttttgggtaactac
tggttgactcaagctgaacgtggtcgtgaaggtgaaggtatgatctttagttcacctgct
gaagctactgtagcttatgaaaatggtgacattcactaccacactatcattggtatgtca
gctgatgctatgcctaagaagccatggccacaaggtcatgaacatggcattttcattact
acatacggtaagcttgtctttaaccaattatttccagatgattacttctacatcaacgaa
ccaactgaagaaaacttaaataatcctttggatgctaagtacttcttgggtgaaggtcaa
gatattcatgacaagattgatgaagttggcgatgatttaatcgctactccatttaagagt
agtttcttatctgattctattgctactatttacaagtactacaaggttcaacgaacttca
gaatacttggatgatttgaagaagttaggttacactagttcaactacttcaggtattacc
attggtatgaatgatgttccagaaattaaagataaggatgaaaaggtagctaaggcacgt
aaacaagttgatattgtttctaagcaattcagacgtggtttaattactgaacaagaacgt
cacgatcgagtaattagtatttggaacgcatgtaaggacgaaatccaaaacgaaattgct
caaattcactcaccacgtaacccaatttcaatcatggccgactctggtgcccgtggtaac
atttcaaactttactcagttagctggtatgcgtggtttgatggctactcctaacggtggt
ttgttcgaaatccctgttacttcaaacttcaaggaaggtttgtcagtattggaattgttc
atgtcaactcacggtgctcgtaaaggtatgactgatactgctttgaagactgctcagtca
ggttacttgactcgtcggttggttgatgttgctcaggacgttattattcgtaatgatgat
tgtggtactgatcgtggtattacagttagtgccattatggaaggtgacgaaatgatcgaa
ccattatttgatcgtttggttggtcgtttcactgctgaaacagttaaggatcctaagact
ggtgaagctatcgtgggtagagatgttatgatggatgaaaacatggctcataagatctgt
gatgcaggtgtaacccatgttaagattcgttcaattcttacttgtgatactccacacggt
gtatgtcgtaaatgttacggtatgaaccttgctactggtgaagaagttgaagttggtgaa
gcagttggtactgttgccgctcaatcaattggtgaacctggtactcagcttactttgaga
actttccacaacggtggtgttgccggtgccgaagatattactcaaggtttgcctcgtgtg
caagaattgttcgaagcacgtaaccctaagggtcgtgcaaccatttctgaagtagatggt
gtaattgattcaattcaagaaaacccagcagaccatactcgtgaaattactgttaagggt
aagattgatactagaagttacagtgttccttacactgcttctgtggctgtatctgaaggc
gactatgttcaccgtggtgataagttgactcttggttctgttgatcctaaggaattgatc
caagttactgatactttgactactgaaaagtacatcttggctgaagttcaaaaggcatat
agaatgcagggtgtagacattgccgacaaacacgtcgaagtattgactcgtcaaatgctt
caaaaggtacgtgtccttgatccaggtgaaactgacatcttaccaggtgaagttatggat
atcggtcaatttagagaccgtaacaaggaagttattatttctggtggtatcccagcaact
gcacaaagcgttatcttaggtattactaaggccgctttggaaactaacagtttcttgtca
gctgcttcattccaggaaactactcgtgttcttactgatgcttcaatcagaggtaagaat
gatccacttcttggacttaaggaaaacgttattatcggtaagattattcctgctggtact
ggtatgcctgtataccgcaacatggaacctgaagctgacgttaagaagccagattcagtt
tactcaattggtgatattgaaaagcaaatgaaagaaaaagaacaaagtaagtaa
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