Lactobacillus helveticus R0052: R0052_03345
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Entry
R0052_03345 CDS
T02217
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lhr
Lactobacillus helveticus R0052
Pathway
lhr03030
DNA replication
lhr03410
Base excision repair
lhr03420
Nucleotide excision repair
lhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R0052_03345
03410 Base excision repair
R0052_03345
03420 Nucleotide excision repair
R0052_03345
03440 Homologous recombination
R0052_03345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhr03032
]
R0052_03345
03400 DNA repair and recombination proteins [BR:
lhr03400
]
R0052_03345
Enzymes [BR:
lhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R0052_03345
DNA replication proteins [BR:
lhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R0052_03345
DNA repair and recombination proteins [BR:
lhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
R0052_03345
NER (nucleotide excision repair)
GGR (global genome repair) factors
R0052_03345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
HHH_2
Polysacc_deac_2
DUF61
DUF3698
Motif
Other DBs
NCBI-ProteinID:
AFR21621
LinkDB
All DBs
Position
583670..586333
Genome browser
AA seq
887 aa
AA seq
DB search
MADKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLLKDVDPTHVL
VAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIG
TFAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTE
FIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKD
KAFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLWQFYEKMNFRKFLAELNASGAGQDGA
EVEKVEYTVLNDDNVKDVKATEKDTVEFYLEMLGANYHLADFVGFSLKINDKIYVSRDVD
LLEEDNIKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDL
GEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHE
QDDLFDTIEIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQAGEEFNLN
SPKQLGHILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVKEILDYRQIAKIQSTYVK
GLLDVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSDPDGYIF
SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN
FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHR
RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH
DELIFDVPKDELETIKKIVPEVMQSAVKLDVPLIADSGWGHNWYDAK
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaaaaattacttctaatcgatggtaactctgtagctttcagagccttttac
gctctttatcgtcaactagaatctttcaagagtccggatggcctgcacactaatgccatt
tacgcttttaagaacatgctcgatgtccttttaaaagacgttgatccaacccacgtattg
gtagcttttgatgcaggaaaagtcacttttagaacaaaaatgtatggtgaatacaaaggt
ggacgtgcgaaaactccagaagagttgctcgaacaaatgccttacattcaagaaatgctg
catgacttgggtattaaaacttatgaattgaagaattatgaagcagatgacatcattggt
acttttgctgcgaagggtgaaaaggccgggttcacaaccacgatcgtaactggtgaccgc
gacttgacccaacttgcgtccgacaagacgactgtcgaagtaaccaagtctggtgtttct
caacttgaagcttatacaccagaacatatgaaggaagttaacggcgtcactccaaccgaa
ttcatcgacatgaaggccttgatgggtgataactctgataactacccaggtgttgaaggc
atcggtcctaagacagcttctaatttaattcaggaatatggttcagtagaaaatctttac
gatcatattgatgaaatgaaaaaatctaagcgtaaggaacgtttaattcgtgataaagac
aaggcctttttagctaaaaaacttgccacgattgatcgtgattcaccagttaccattgat
attgatgacgtaaaacgcgagccagttgattatgaaaagctgtggcaattctacgaaaag
atgaacttccgcaagtttttggcagaacttaatgcttcaggtgccggtcaagatggtgcc
gaagttgaaaaagtagaatacactgttttaaacgatgacaatgttaaagatgttaaagcc
actgaaaaagacactgttgaattttatctagaaatgctcggcgctaactaccacttagca
gattttgtcggctttagcttgaagatcaacgacaagatttatgtttcaagagacgtggac
ttgcttgaagaagacaatatcaagcacatcttagaagatgaaaagatcaagaagaacgtc
tttgacttaaagagatccatggttggggcccatcgtttaggcattcatacgcacggcctt
gattatgatatgcttttagcctcatatctagttaataatgaaaacaactctaatgatctt
ggtgaaattgcccatctttatggggattattccgttaagactgaccttgaagtctacggc
aaaggtaagagtgaacacatccctgatgacgatgatgaattattcaaccacttagcttcc
aaggtcaacgccattgaatcactcaagaagactctgcttgaaaagctcaaagaccacgaa
caagatgatttgtttgatacgattgaaattccaactgctcgagtactggctaagatggaa
atcaatggtatgaaggtcgaagcaagtactttaatccaattgcaaaatgaatttgccgtg
aagttgcaggatttagagaagaaaatctatcaacaagctggggaagaatttaatctaaac
tcaccaaaacaattaggtcatattttgtttgaaaagttaggcttgccagttttgaagaag
accaagacaggctattcaacttcagttgaagtgctcgatcaattgaagacacaaagccca
attgttaaagaaattcttgattatcgtcaaattgctaaaattcaatcaacttatgttaag
ggcttgcttgatgtaatccaacctgatggtcgtgttcatacgcgctatttacaaacctta
actgcaactggacgtttatctagtgttgatcctaacttgcaaaacattccaactcgtact
gaggaaggcaagcagattagaaaagcgtttgtcccaagtgatcctgatggctatattttc
tcttgtgactactcacaagttgaactccgtgtgctcgcccatgtttctggtgatcaaaac
atgcaagaagccttcaagaccgggtatgacatccactcacacaccgcgatgaagatcttc
cacttggagtcaccggatgaggtaacaccactgatgcgtcgtcacgccaaggcagttaac
ttcggtatcgtctacggtatttccgattatggtttgtccaagaatttaggtatttctagg
aaacgtgcgcaagaatttatcgataattattttgaacaatatcctcaaatcaaggattac
atgaataaagcagtacaagaagcacgtgacaagggctatgcggaaacgatcatgcatcgc
cgcagatatttgccagatattcatgctaagaaatacactgtccgtgcttttgcggaaaga
accgccattaattctccaattcaaggttcagctgccgatattatcaaaatcgctatgatc
aatatgcaaaagaagttagatgaacttcatttgaagactaaaatggtagtgcaggtacat
gacgaattgatttttgatgtaccaaaggatgaactggaaacaattaaaaagattgtacct
gaagtaatgcaatcagctgttaagttagatgtgcctttgattgctgattctggttgggga
cacaattggtatgatgcaaagtag
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