Lactobacillus helveticus R0052: R0052_03350
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Entry
R0052_03350 CDS
T02217
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lhr
Lactobacillus helveticus R0052
Pathway
lhr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R0052_03350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhr03400
]
R0052_03350
Enzymes [BR:
lhr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
R0052_03350
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
R0052_03350
DNA repair and recombination proteins [BR:
lhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
R0052_03350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_8
Zn_Ribbon_Prim
ZNF512_C2HC
Motif
Other DBs
NCBI-ProteinID:
AFR21622
LinkDB
All DBs
Position
586342..587172
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AA seq
276 aa
AA seq
DB search
MPEMPEVETVRRTLIPLIKGKTIEKVILWYPKIVATDHEKFLSELPGKKIIDIDRYAKYL
LIRLSDNLTIVSHLRMEGKYHLTTSDAPKDKHDHVEFIFTDGTALRYNDVRKFGRMQLIL
TGTERQTTGIGKLGYEPNSSEFTSEYLVNGLKRKKKNIKNTLLDQSVVAGLGNIYVDEVL
WRTKIHPLSQANKIPAEKVIELHDQINQIITEAIKLQGTTVHSFLNANGQVGGFQSKLQV
YGHVGEPCSVCGTKFEKIKVNGRGTTFCPHCQVIYK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaatgccggaagttgaaacggttcgaagaactttgattcctttaattaaagga
aaaactattgaaaaagtgattttgtggtatcccaaaatcgtagcgacagatcatgaaaag
tttttatctgaattacctggtaaaaaaatcattgatattgatcgttatgctaagtatttg
cttattcgtttgagtgacaatttgacgattgtttctcatttgcgaatggaagggaagtac
catctaaccacatctgatgcgcctaaagataaacatgatcatgttgagtttatttttacg
gatggaacagccttacggtataatgacgtgcgcaagtttggtcggatgcaattaatttta
actggaactgaaaggcaaactacagggattggcaaattaggttatgaaccaaatagttct
gaatttacatcagaatatttggtaaatggcttaaaacgtaagaagaaaaatatcaaaaat
actttgcttgaccagtcagtagtggccggccttggcaatatttatgttgacgaagtcttg
tggcggactaagatccatcccttgagtcaggctaacaaaatccctgctgaaaaagtaatt
gaattgcatgatcagattaaccaaattattaccgaagcgattaaattgcaaggtacgact
gtccattcctttttaaatgcaaatggtcaagttggcggctttcaaagtaagttgcaagtc
tatggccatgtaggtgaaccttgttcggtttgcggcacgaagtttgaaaaaattaaggtt
aatggtcgaggtaccactttttgccctcattgtcaggtgatttataaatga
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