Lactobacillus helveticus R0052: R0052_04760
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Entry
R0052_04760 CDS
T02217
Name
(GenBank) DNA polymerase III, alpha subunit (type)
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lhr
Lactobacillus helveticus R0052
Pathway
lhr03030
DNA replication
lhr03430
Mismatch repair
lhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R0052_04760
03430 Mismatch repair
R0052_04760
03440 Homologous recombination
R0052_04760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhr03032
]
R0052_04760
03400 DNA repair and recombination proteins [BR:
lhr03400
]
R0052_04760
Enzymes [BR:
lhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R0052_04760
DNA replication proteins [BR:
lhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R0052_04760
DNA repair and recombination proteins [BR:
lhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R0052_04760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
RNase_H_2
HHH_3
DEDDh_C
T2SSK
Zn-ribbon_8
TorS_sensor_domain
zf-ribbon_3
YhfH
Motif
Other DBs
NCBI-ProteinID:
AFR21848
LinkDB
All DBs
Position
834735..839045
Genome browser
AA seq
1436 aa
AA seq
DB search
MANKNDLFLKLLKQVHFPNSFEDNDLLQKGKVENVDVYAKEHRWDIHVFFDTPLKYDTYV
ALRKAIEETFSAFVNVRFFVGTFDGSDKYLPDYWHYAVQNSNILSPVAREFLAGQKPKKE
NGRWVIPVDNNVIDGLIEQKALDDLAEKMRDFGFFNLKFITEVDQTNLQNSLESLQELQQ
EHEKSMQEAFNNTPEKPKPKPKQQYQTKRTSYGSRKLDEKAPITQIQDVEDGTRNVVIEG
NIFNIESRELKNGSVIFTGEITDYTNSIAFKKFASNKEQIEQMAAIKPGTWAKMQGSAMD
DQWVHDVVFNISSFETVEHIGRTEKYEGEQKRVELHLHTNMSQLDATNAPSDFIKTAKKF
GQKAIAITDHGDVQSFPEAYSTGKATGTKILYGVEANMIDDHALLVINPAPMTYEDREFV
IFDVETTGLSSVYDTIIEIGAVKMKNGEVIERFDKFINPHHPLSEQTINLTSITDEMVSA
ADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEVSRLLHP
EQNRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMYKLLDAFKKKYNEDNLNNLNGYAAH
GEVYKRARPSHMTVLAKDQKGLKNLYKLVSIASTKDFYRIPRTPKSDLARLHEGLFYGSG
CWQGDVFIAMMQKGYDEAREKAKFYDFLEVQPPANYSQLIEDGLIKDEAQLEDIIRNIYK
LGKELNKPVVATGDAHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAFSF
LGEDIAKEIVIDNTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLP
KIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEV
NPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPQCGTQLVKDGQDIPFATFLGFHGDK
VPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYAKHFDEERDLKARN
AELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSI
HDNILKFDILGHDDPTMIRHLQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSET
GTLGVPEFGTRFVRGMLEETKPTTFAELLQISGLSHGTDVWLGNAEDLVNNGTCKLKDVI
GCRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDWYIPSCLKIKY
MFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQ
DKGNDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPG
LGDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDENQLSLF
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaataaaaatgatcttttcttaaaattgctcaaacaagttcattttccaaatagt
tttgaagataatgatcttcttcaaaagggaaaggttgaaaacgtggatgtttacgctaaa
gaacataggtgggatatccatgttttttttgatactcctttgaaatatgacacgtatgta
gcattaagaaaagcaatagaagaaactttttctgcatttgtaaatgtaagattttttgtt
ggtacatttgatgggtctgataaatatttgcctgattactggcattatgcagtacaaaat
tcgaatattttatccccagttgcaagagaatttttagctggacaaaagcctaaaaaagag
aatggtcgttgggtcattccagtcgataataatgtaattgatggattaattgaacagaag
gctttagatgatctagctgagaaaatgcgtgacttcggtttctttaatttgaaatttata
actgaagtggatcagactaatttgcaaaatagtttagagagtctgcaggaacttcagcag
gaacatgaaaagagcatgcaagaagcttttaataatactccagaaaaaccgaagccgaaa
ccaaaacagcaataccaaaccaagcgtactagttatggcagtcggaaattagatgaaaaa
gctccgattacacaaattcaagatgttgaagacggcacaagaaatgttgtaatcgaaggt
aacatttttaatattgaaagcagagagttgaaaaatggttcagtaatttttacaggtgaa
attacggactatactaattcgatcgcttttaaaaagtttgcttcaaataaggaacaaatt
gaacaaatggctgctattaagcctggtacctgggctaaaatgcagggatcagccatggat
gatcaatgggttcatgatgtagtattcaatattagtagttttgaaacagtagaacatatt
ggtcgaacggaaaagtatgaaggtgagcaaaagagggtagaacttcatttgcacaccaat
atgagtcaattggatgcaactaacgccccaagtgattttattaaaactgctaagaagttt
ggtcaaaaagccattgcgataacagatcatggtgatgtgcaatctttccctgaagcttat
agtacaggtaaagctactggtactaagattttatatggtgttgaagcaaatatgattgat
gaccatgcattattggttattaatcctgctccaatgacatatgaagatcgtgagtttgtt
atcttcgacgttgaaactaccggtttatcatcagtttatgacactatcattgaaattggt
gcggttaagatgaagaatggtgaagttattgaaaggtttgataaatttattaatccgcac
catcctttgagtgaacaaactattaacttaacttcaattaccgacgagatggttagtgcc
gctgatgatgaagatgtagttattaagcaattccaagatttctatggtgatcgtcctcta
tgtggacacaatgttcaatttgatgttggttttgttaatgcagcattaagaagagcgggc
cttagtgaaattactcagccagttgttgatacgctagaggtttctcgtttgcttcaccca
gagcagaaccgtcatactctggattcattggcaaagaaatataatgtttctttggagcat
caccatagagctaatcaagatgcggaagcaactggttatttaatgtataaactgttagat
gcttttaagaaaaagtacaatgaagacaatttaaataatttgaatggctatgccgcacat
ggtgaagtttataaacgtgctcgtccatctcatatgaccgttttagctaaagatcagaaa
ggattaaagaatctttataagctggtttcaatcgcaagtaccaaggacttttatcgaatt
ccgcgtacacctaaatctgatttagctcgtttgcatgaagggctgttttatggttcaggt
tgttggcaaggcgatgttttcatagcaatgatgcaaaagggttatgacgaagctagagaa
aaggctaagttttatgattttttggaagttcaaccacctgcaaattattctcaattaatc
gaagatggtttaattaaagacgaggcgcagcttgaagatattattagaaatatttataag
ctgggtaaagaattaaataagccggttgtagcaaccggggatgcacactatgttgaacct
catgatgctatttatcgaactattttaatctcagctcaacgttctaatccaaatagaaat
aagccgcaacctgacttgcatttttattcaacacaagaaatgcttgatgcgtttagtttt
ttaggtgaagacatagctaaagaaattgttatagacaataccaataagattgctgatgaa
atttctgagattcagccaattaaagatggattgtatccaccgcatattgctcatgctgat
gaagaaatgaagaaattaacttatgataaggcttatgagctttacggtaagccgttacct
aagattgttaaggatcgaattgatctagaactaaattcaattatttcaaatggatacgcg
gttatttatttaatttctcagcgtttggtagctaagtctaataaagatggctatttggta
ggttcacgtggttctgtaggatctagtttagtagctactatgtcaggaattactgaggtt
aatccacttgcaccacattatcgatgtcctaagtgtaaatactcgcaattctttgaaaat
ggtgaatatggttccgggtttgacttaccagacaaggcttgtcctcaatgcggcactcaa
ttggttaaagatggtcaagatattccatttgcaactttcctaggattccatggggataag
gttcctgatatcgatttgaatttctcaggagactatcaacctgtagcccataactttatt
cgagtaatgtttggtccagataattcttatcgtgccggtacaattgccactgttgcagat
aaaactgcatatggttacgcaaaacactttgatgaagagcgtgatttgaaggcaagaaat
gcggaattagatcgattagctagcggtattcgtggtgtaaaaagaactactggtcaacac
ccggctggtattgttgtagttcctgatgatatggatatttatgactttacgccagtatct
tatccagccgacgatgttaatgcagcatggttgattacgcactatgacttccactccatt
cacgataacattttgaaatttgatatcctgggtcacgatgatccgactatgattcgtcac
ttacaggatctttcgggaattgatccattgactattcctccagacgatccaggcgttatg
tctctattttcaagtcctaagattttaggggttacacctgaacaaattcagtcagaaacc
ggtactttaggtgtgcctgaatttggtactcgttttgttagagggatgcttgaagaaact
aagccaacaacatttgcggaattactgcagatttcgggtttgtcacatggtactgacgta
tggttaggcaatgctgaagatttagtcaataatggtacttgcaaattgaaggatgttatt
ggttgtcgtgataacatcatgatggacttgattcactggggagttaagcctgaagttgcc
ttttcaactatggaatctgttcgtcacggccgtggtatcagtgatgaaaatatggctatt
ttaaagaaaaataaaaatattcctgattggtatattccttcatgtttgaagatcaagtat
atgttccctaaggctcacgctactgcgtatattttaatggctttgcgtattgcttggttt
aaagtatattatcctgaaatttattacactgcttacttctcagtgcgtgctgatttattt
gatttagttgcaatgagtcatggtaaaaacaccgtgaaggcggcaatgaaagagattcaa
gataagggaaacgatgcttcagcaaaagataagagtttgctaacagtcttagaaattgct
aatgaatgtcttgaacgtggcatcaagattaaaatggttgatattgaccaatctgaagct
acggacttcaagatcttagataagcacactattttggcaccatttaatgccgtacctggc
ttaggtgataatgcagctaagcaaattgtggccgctcgtgctgaaaagaaattcttatct
aaggaagatttagcaaaacgtggcaaagtttctcaaacaatcatgaattattttgaagat
aatggtgtactagaaggtatgccagatgaaaaccaattatcacttttctag
DBGET
integrated database retrieval system
