Lactobacillus helveticus R0052: R0052_07520
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Entry
R0052_07520 CDS
T02217
Name
(GenBank) Metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lhr
Lactobacillus helveticus R0052
Pathway
lhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0052_07520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhr03019
]
R0052_07520
Messenger RNA biogenesis [BR:
lhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R0052_07520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
AFR22291
LinkDB
All DBs
Position
1319844..1321523
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AA seq
559 aa
AA seq
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MRIKNNEVAVYAIGGLHEIGKNMYCVQYQDEIIIMDCGIKFPEDDLLGINYVISDYSYLI
KNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALSLIRGKLEEHGILKTTELH
EEHEDTVLKFKKLSVSFFRTTHSIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMNQPAPDF
QKMAQLGKEGVLALLSDSTNAEVTQFTKSERFVAQSLHNIITGIHGRIIFATFASNLYRV
STAIQAAIDTGRKVAIFGRSMENGVANGIDLGYLNVPKDLIVNAEEINKLPPDKVMILCT
GSQGEPLAALSRIANGTHRQITLQPGDTVIFSSNPIPGNTLSVNHLINKLMEGGANVIHG
RVNNVHTSGHGGQEELKMMVRLSKPKYMIPVHGEYRMQVIHTQLAQEAGVPAENTFVLSN
GEVVCFGPNGARIAGRIPAGDVYVDTSGTADVGNVVVHDRQILSEEGLVVAVATVDYKHK
RVLAGPDILSRGFVYMRESTELINQAQKHVYHVLINEMAKSDKPKESDIKKAISENLSDF
LYSKTERRPMILPIIIEKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaattaaaaataatgaagtagccgtttatgcaatcgggggtttgcatgaaatcggt
aaaaatatgtattgtgtgcagtatcaggatgaaattatcatcatggactgtggtattaaa
ttccccgaagacgatttattaggtattaattacgttatttctgattattcatacctaatt
aaaaaccgtaagaagattaaagctcttgtagttagtcatggacatgaagaccacattggt
ggtattccatttttattggaaaagatccctgaaattcctgtttatgcaactccatttgcc
ctttcattaatcagaggcaagttagaggaacacggaattttaaagactaccgaactacat
gaagaacatgaagatacggttttaaaatttaagaaactctctgtttctttcttcagaacc
actcactccattcctgatactttaggaattgccgttcatacgccacttggtgctgtagtc
tttactggtgattttaagtttgacttaacacctgtaatgaatcaacctgcaccagacttt
caaaaaatggctcaactaggtaaagaaggagtacttgcacttctttcagattctactaac
gctgaagttactcagtttaccaaatctgaaagattcgttgcacagtcacttcataacatt
attactggtatccatgggcgaattattttcgcaacatttgcctctaatctttatcgtgta
tcaacagctattcaagctgctattgataccggtagaaaagttgccatttttggacgtagt
atggaaaacggcgttgctaatggtattgatttaggatacttaaatgtacccaaagattta
atcgttaatgcagaagaaatcaacaaattaccaccagataaagttatgatcctatgtact
ggatcacaaggtgaaccattagcagctctttcaagaattgccaatggtactcacagacaa
ataactttacagcctggtgacacagttatcttctcttctaacccaattccaggaaacaca
ttgagcgtaaaccacttaattaataaattaatggaaggcggcgctaatgtcatccatggt
cgtgttaacaacgtccacacttctggtcacggtggtcaagaagaattaaagatgatggtg
cgtttatctaaacctaagtacatgattccagttcacggtgagtatagaatgcaggttatt
catacgcaattagctcaagaagctggcgtacctgcagaaaatactttcgtgttgtctaat
ggtgaagtcgtatgttttggacctaacggagctagaattgctggtagaattccagcaggc
gatgtttatgttgatacttcaggtactgcagatgtcggtaatgttgttgtccatgatcgt
caaattctttcagaagaaggattggttgtggcagtagcaactgttgactacaaacataaa
cgtgtcttagctggtcctgatattctcagtcgtggtttcgtctacatgcgtgaatcaact
gagttaatcaatcaggctcaaaaacatgtctaccacgtacttataaatgaaatggctaaa
tcagacaagcctaaggaaagtgatattaagaaagcaatttctgaaaatctttctgatttc
ctttattctaagactgaacggcgaccaatgattttaccaatcattattgaaaagaaataa
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