Lactobacillus helveticus R0052: R0052_08265
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Entry
R0052_08265 CDS
T02217
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lhr
Lactobacillus helveticus R0052
Pathway
lhr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R0052_08265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhr03400
]
R0052_08265
DNA repair and recombination proteins [BR:
lhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R0052_08265
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R0052_08265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
nSTAND1
nSTAND3
AAA_29
AAA_22
AAA_23
AAA_33
DnaJ_CXXCXGXG
AAA_14
AAA_21
BCA_ABC_TP_C
Viral_helicase1
NACHT
SLFN-g3_helicase
AAA_24
RNA_helicase
cobW
Mtrc-MtrF_II-IV_dom
T2SSE
DUF1924
DUF87
MMR_HSR1
Septin
Dynamin_N
Motif
Other DBs
NCBI-ProteinID:
AFR22421
LinkDB
All DBs
Position
complement(1453725..1456565)
Genome browser
AA seq
946 aa
AA seq
DB search
MVNDKIVIRGAREHNLKDIDVTIPKNKLVVVTGLSGSGKSSLAFDTLYAEGRRRYVQSLS
SYARQFLGQMDKPDVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP
ICPNDGTLIERQSVDQMVDRIMALPERTKIQLLAPVIRAKRGEHKDVFKRVQRAGYVRVI
VDGEMHEIGEEFNLAKNKRHNIDIVVDRLIMKDSIKSRLFDSIESALRLSDGYMNVDVIG
DEMLNFSEYYACPKCGFTVGEMEPRLFSFNAPFGACPDCDGLGMNLAVDEDLVVPDKSKT
LAEGALAPWKTSNYYTEMLEQACAALDIPMDKPFNKLTKKQRETILHGSTKPVKFHVTGD
FGVNDTTQPFEGVMDNVERRYKHPMSKFMRDVMGKYMTELTCSTCHGKRLNEKALAVKVM
GKDIAEASELSISKSLDFFKSVKLSEQETVIAKPILKEVCDRLSFLDSVGLDYLTLSRSA
NTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKRMRDLGNSLIVV
EHDNETMRQADYLIDMGPGAGVYGGKVMAQGTPEEVEKNPKSLTGQYLSGKKFVPVPLKR
RKGNGKKITITGAQENNLKNINVDFPLGKFIVVSGVSGSGKSTLVNMILKRALAQKLNHN
STKPGKYKSIRGYKNIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRTLFAQTNEAKMRGY
TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGNRYNSETLEVTYREKNIA
QVLDMTINEACKFFENIPKIARKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLAAELQK
LSTGKNFYILDEPTTGLHADDIKRLLEVLQRLVDEGNTVLVIEHNLDVIKNADWIIDLGP
EGGEGGGNVVATGTPEEIAEVKESYTGQYLKPVLKRDTKLTRDAEK
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatgataagatcgttattcgtggtgcacgagaacataatttaaaagatatcgat
gtaactattcctaaaaataaattagtagtagttactggtctatcgggatctggtaagagt
tctttagcctttgataccttatatgccgaaggtagaaggcgttatgtgcaatcactttct
agttatgctagacaattcttgggtcaaatggataagccagatgttgattcaattgatgga
ttaaatcctgctatttcaattgatcaaaaaactacctcacataatccgcgttcaactgta
ggaacggtaacggaaatcaatgactatttgcgtcttttgtgggctcgtgtaggtcatcct
atttgtcctaatgatggaactttaattgaacgacaatcagttgatcaaatggtagatcgc
atcatggctttaccagaaagaacgaaaattcaattattagcccccgttattcgagctaaa
cgtggtgaacataaggatgtttttaagcgagtacagcgtgcaggctatgtccgtgttatt
gtcgatggcgagatgcatgaaattggcgaagaatttaatttagctaaaaataagcgtcat
aacattgatattgtggtagatcgcttgatcatgaaagacagcattaaatctcgtttgttt
gactcaattgaatcagcacttcgtttatccgatggctacatgaatgttgatgtcattggc
gacgagatgcttaacttttccgaatattacgcttgtcctaagtgtggctttacagtagga
gaaatggaaccaagactcttctcatttaatgcgccatttggtgcttgtcctgattgtgat
ggattagggatgaatttagcagttgatgaagatttggttgtgcctgataagagtaaaact
ttagcagaaggtgcattagctccttggaagacgtccaattattatactgaaatgttggag
caagcctgtgcagcactcgatattccaatggataagccttttaataaattgactaaaaag
caaagagagacaattcttcacggttcaactaagccggttaaattccatgttaccggtgat
tttggcgtcaatgatacaacccagccatttgaaggagtaatggataatgtcgaaagacgt
tataagcatccaatgtctaaattcatgcgtgatgtaatgggcaagtatatgacagaactg
acttgttcaacttgtcacggtaaacgattgaatgaaaaagctctggctgtaaaagtgatg
ggtaaggatatcgctgaagcttctgaactttcaattagtaaatctttggatttctttaag
agcgtcaaattaagcgaacaagaaactgtgattgctaagccgattttgaaagaagtatgt
gatcgtctttcattcttggatagtgtaggattagattatttaactctttctcgttctgct
aatactttatctggtggggaagctcaacgtattcgtttggctacacaaattggttctaac
ttgtcaggagttatgtatgttttagatgagccttcaattggacttcatcaacgtgataat
gatcgattaattgcttcacttaagagaatgcgggacttaggtaactccttgattgtggtt
gaacatgataatgagaccatgcgtcaagccgattatctgattgatatgggaccaggtgcc
ggtgtatatggtggtaaggtaatggctcaaggtacgccagaagaagtagaaaagaatcct
aaatcattaactgggcaatatttgtctggtaaaaaatttgttcctgttccattgaagcgt
cgtaagggcaatggtaagaagatcactattactggtgcacaagaaaacaacttgaagaat
atcaacgttgattttcctttaggaaaatttatcgtagttagtggtgtttcaggttcaggt
aaatcaaccctggttaacatgattttgaagcgagcattggctcagaaattaaatcataat
tcaactaagccaggcaaatataagtcgattcgtgggtataagaatattgaaaaaataatc
gatattgatcaaagtcctattggacgtactccacgcagtaacccagctacttataccagt
gtatttgatgatattcgtacgctctttgcccaaacaaatgaagctaagatgagaggctat
actaaagcacgtttttcatttaacgttaaaggcggccggtgcgaagcatgtcatggtgac
ggaattattaagatcgaaatgaacttcttgccagatgtgtatgttccatgtgaggtttgt
cacggcaaccgttataattcagaaactttggaagtaacttatcgtgaaaagaatattgct
caagtgcttgatatgacaattaatgaagcatgcaagttctttgaaaatattcctaaaatt
gcacgtaaactgcaaaccattgtcgatgtagggttaggctatgttaaattaggtcaatct
gctacaactttatctggtggagaagcccaaagaatgaagttagcggcagagttgcaaaaa
ctgtcaactggtaagaatttctatattttggatgaaccaacgacaggtttgcatgctgac
gacattaaacgtttgcttgaagttctgcagcgtttagttgatgaaggaaataccgtttta
gtaattgaacataatttagacgtgattaaaaatgccgattggattattgatttaggacct
gaaggcggtgaaggtggcggcaatgttgttgctacaggaacgcctgaagaaatagctgag
gtaaaagagagctatactggtcaatatttaaagccggttttaaagcgtgatactaaatta
actagggatgcagaaaaataa
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