Lactobacillus helsingborgensis: DLD54_04030
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Entry
DLD54_04030 CDS
T06906
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLD54_04030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhs03019
]
DLD54_04030
Messenger RNA biogenesis [BR:
lhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DLD54_04030
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AWN33373
UniProt:
A0A0F4M2F7
LinkDB
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Position
complement(845155..846834)
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AA seq
559 aa
AA seq
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MRIKNNEVAVVAIGGLHEIGKNMYCVQYQDEIIIMDCGIKFPEDDLLGINYVISDYSYLI
KNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALALIKGKLEEHGILRTTELH
EEHEDTVLKFKKLTVTFFRTTHSIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMNQPAPDF
QKMAKLGNEGVLALLSDSTNAEVTQFTKSERFVAKSLHDIITGIHGRIIFATFASNLYRV
STAIQAAKDTGRKVAIFGRSMENGVQNGIDLGYLNVPDGLIVDANEINHTPAEEVMILCT
GSQGEPLAALSRIANGTHRQISLQPGDTVIFSSNPIPGNTLSVNHLINKLMEGGANVVHG
RINNVHTSGHGGQEELKMMVRLTKPKYMIPVHGEYRMQVIHTELAQAAGVPAENTFVLEN
GEVVCFGPEGSRIAGHIPAGDVYVDTSGTADVGNVVVHDRQVLSEDGLVVVVATVDYKHK
RVLAGPDVLSRGFVYMRESTELINQAQKHIYHVLKSEMDKMEHPKDSVIRNAIIANLSDF
LYSKTKRRPMILPMLVEKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcattaaaaataatgaagttgccgtcgttgcaatcggggggttgcacgaaataggc
aaaaatatgtattgtgttcaataccaagatgaaattattatcatggattgtggtattaag
tttcctgaagatgatcttcttggtattaattatgtaatttctgattattcgtatttaatt
aagaatcggaaaaaaattaaagcacttgttgtgagtcacggtcacgaagaccatattggc
ggtattccgtttttactggaaaaaattccagaaattccggtttacgccactccttttgct
ttggcacttattaaaggaaaactcgaagaacacggcattctgcggacaacagaattgcac
gaggagcatgaagacactgtccttaaattcaaaaaattaacagtgactttctttagaact
acccactctattcctgatactctgggtatagccgttcatactccgctgggtgcagtcgtg
tttactggtgacttcaaatttgacttaacacccgtcatgaatcagccagcccctgatttt
caaaaaatggctaaattaggtaacgaaggtgttctagctttattatctgattcgactaat
gctgaagtaacgcaatttaccaagtccgaacgttttgtagccaaatcgctacatgacatt
attacaggaattcatggtcgaataatattcgccacgtttgcttctaatctttaccgtgtt
tcaaccgctattcaggcggccaaagataccggacgtaaagttgccatttttggacggagc
atggaaaatggcgtgcaaaatgggattgacctaggttacttaaatgttcctgatggtttg
atcgttgatgctaacgaaattaaccatactccagcagaagaagtcatgattttatgtact
ggttctcagggtgaaccgctggcagctttatctcggatagctaacggtactcacaggcaa
ataagtctgcaaccaggagatacagtaattttctcctctaacccgattccaggaaatacc
ttaagcgtgaatcacttaattaataaattaatggagggtggcgccaacgtcgttcatggc
agaataaataacgtccatacatctggacatggtggtcaggaagaacttaaaatgatggtt
cgtttgaccaagcccaagtacatgattcctgttcacggcgaataccggatgcaagtcatt
catactgaattagcacaggcagccggtgtccccgcagaaaatacttttgtccttgaaaac
ggcgaagtagtttgttttggtcctgaaggatcaagaatagccggtcacattcctgcgggc
gatgtttatgttgacacttcaggtactgctgatgtgggcaatgttgttgtccatgacaga
caagtattatctgaagatggtttagtggttgtggtagcaactgttgattataagcataaa
cgtgtactggctggtcccgacgttttaagtcgcggttttgtctacatgagagaatctaca
gaattaattaatcaagcgcaaaagcacatttatcatgtgctaaaatctgagatggacaaa
atggaacacccaaaagacagtgtaatccgcaatgcgataatcgctaacttatcggacttt
ctgtattctaaaacaaaaagacggccaatgatcttacctatgttagttgagaaaaaataa
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