Lactobacillus helsingborgensis: DLD54_04100
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Entry
DLD54_04100 CDS
T06906
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLD54_04100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhs03019
]
DLD54_04100
Messenger RNA biogenesis [BR:
lhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DLD54_04100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4755
Regulator_TrmB
PerC
Motif
Other DBs
NCBI-ProteinID:
AWN33387
UniProt:
A0A0F4M2K1
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Position
858582..860366
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AA seq
594 aa
AA seq
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MTDQVKIMILSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSTLFGIDLVIPDLDFFEQYG
DQVVGIFLTHGHADSIGALPYILRQYDIPVFGSQLTIELAKITVKRENKRCKNSLFHVID
ADTEIEFKNANISFFPTTHSIPDSLGIDVHTPAGEVVYTGDFKFDPSAAPKYRTDLDRLA
EIAHKKVLALLSDSSNAEASLPNVAEQDIGDYVTNVFRNAKGRVIVAAKASNLIRIQEVL
NAAHKTGRRVLLTGRDLAKIVRTAMSLGYLTVPKGLLMRVKNLKETPDEKTVILETGQMG
EPLNSLQKMAKKRHSMITIHKGDLVFIATTPSHSVETIVAQTSDLVYRAGGTVIQLGKAK
HTSGHATGRDLQLLIGILKPQFLIPVIGEYRLLEVHKDLAIRAGLKRENIFITKNGDCLS
YDFNQERLYLTDPVPGEDTMIDGSGIGDVGNIVLRDREVLSDDGIFIAVVTIDRRKKKII
AQPQVTSRGFVYIKANQQLMRDSIELIKKTINNNFEHKKFDWTEIKQDVRNDLEKFLYRK
TNRRPVVLPVVMEVNQNRHRAMQKRNSKNEQTKEETHHPVDVNKTGQRIVKKDK
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaagttaaaattatgattctgagcggtgttcgtgagcaaggaaaagacatg
ttcgccgttcaagttaatgatgaaatttttgttcttgatgccggtcttaaatatcctgat
agtacgttgtttggaattgatttggttattccagatctggacttttttgaacaatacggc
gatcaggttgtcggcatctttttaacacacggacatgctgattctatcggcgctttgcct
tatattttacgtcaatatgacatacccgtttttggctcacaactaacaattgaactagcc
aagattactgttaaacgcgaaaacaaacgttgcaaaaatagtctttttcatgtgatcgat
gcagatactgagattgaatttaagaatgctaatatctcatttttccctacaacacactct
attcctgactctttgggaattgatgtgcatacccctgcaggtgaagttgtttacacagga
gatttcaaatttgatccttcagcagcacccaaataccgcacggatctggatcgtttagca
gaaatagcacataaaaaggtattggcactgttaagtgattcttccaatgctgaagcatca
cttcctaacgttgcagaacaggatattggggattatgtaacgaatgtttttcgtaatgcc
aagggcagagtaattgtagcggctaaagcctccaatttaatcagaattcaagaagtatta
aatgccgctcataaaactggtagacgtgttttattgacaggtagagacttagctaaaata
gtgcgaacagctatgagcttgggttatctaacagttcctaaaggtctgttaatgcgggtt
aaaaatttaaaagaaactcctgatgaaaaaaccgtcattcttgaaacgggtcaaatggga
gaacctttaaattccttgcaaaaaatggctaaaaagcgccatagcatgatcacaatacat
aaaggcgatttggtttttattgctacaacaccgtcgcattctgttgaaactattgtggcg
caaaccagcgatctggtttatcgtgctggaggcactgttatccagcttggtaaagctaaa
cacactagtggtcacgctacaggcagggatctccaacttctaattggcatcttaaagccc
cagtttttaattcctgtaattggtgaatacagactgcttgaggttcataaagatttagct
atcagagctggactaaaaagagaaaatatttttatcacgaaaaatggtgattgcttaagc
tacgattttaaccaagaacgactttacctgactgatccggttccaggagaagatacaatg
attgacggctctggtattggcgatgttggcaacatcgtactgcgcgatcgtgaagtattg
tcagatgatggtatttttattgctgtagttacgattgaccggcgtaagaaaaaaattata
gctcaaccacaggtaacaagtcggggctttgtttatattaaggccaaccagcagttaatg
cgtgacagcattgaattgattaaaaaaactattaacaacaattttgaacataaaaaattt
gattggactgaaattaaacaagatgtccgtaacgatttggaaaagtttttatatcgtaaa
acaaatcgcagaccagtggttttaccagtagtaatggaggttaatcagaatcgccaccgt
gctatgcaaaaaagaaatagcaagaatgagcagacgaaggaagaaacccatcatccagtt
gatgttaataagactggccaaaggattgtcaagaaagataaataa
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