Lactobacillus helsingborgensis: DLD54_04620
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Entry
DLD54_04620 CDS
T06906
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DLD54_04620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhs03021
]
DLD54_04620
Transcription machinery [BR:
lhs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DLD54_04620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Ribosomal_S25
DUF2070
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-ProteinID:
AWN33484
UniProt:
A0A0F4M1X1
LinkDB
All DBs
Position
complement(974736..975857)
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AA seq
373 aa
AA seq
DB search
MAENKKTENNEQLSLDKMVKKVVKEVKKDKSITEDEFVDRLIKPYKLQGKAVDQLVQEFE
DNGISIVDEKGNPSSLALKKQKDVEKAELKDMSAPSSVRMNDPVRMYLKEIGRVPLLNAD
QEISLAKRIEKGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKF
DYSLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPT
PEEIGAEMDMPTAKVRDILKIAQEPVSLETPIGEEDDSHLGDFIKDKDATSPEQHASYEM
LKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR
HPSRSNQLRDFLD
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtggcagagaataaaaagactgagaacaacgagcaattatctttagataagatggtcaaa
aaagttgttaaagaagttaaaaaagataaatcaattaccgaagatgaatttgttgatcga
ttgattaagccttataaactccaaggaaaggcagtcgaccaactcgttcaggaattcgaa
gataacgggattagtatcgttgatgaaaagggcaatccttctagtttggctttgaagaaa
caaaaagatgttgaaaaagctgaattaaaggatatgtctgctccttcgagcgttagaatg
aatgatcctgtcagaatgtatcttaaagaaattggtagggtaccattactaaatgctgat
caggaaatttctttggcaaaaaggattgaaaaaggtgacgaagaagctaaacaagaatta
gctgaagctaacttgcgtttggtagtttcgattgcaaaacgttatgttggtcgtggcatg
tcatttttagacctaatccaagaaggcaacatgggactgatgaaagccgtagacaagttt
gactacagtttaggtttcaaattttcaacctatgccacttggtggattaggcaagcaatt
acacgtgctattgccgaccaagccagaactattagaattccagttcacatggttgaaact
atcaataagttaattaggattcaaagacaactattgcaggatttaggacgcgaaccaact
ccagaagaaattggagccgaaatggatatgcctactgctaaagttcgcgacattttgaaa
attgctcaagaaccagtctctttggaaactcctattggagaagaagatgactctcattta
ggtgactttatcaaagataaagatgcaactagtcctgaacaacatgcttcttatgaaatg
ctcaaggaacaattagaagaagttcttgatactttaactgatcgcgaggagaatgttttg
cggttacgctttggcttagatgatggtcgcactagaactctagaagaagttggaaaagta
tttggagttacaagagagcgaattcgtcagattgaagcaaaggctttgcgtaaattacgt
catccaagtagatcaaatcaactacgtgatttcttagattaa
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