Lactobacillus helsingborgensis: DLD54_05120
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Entry
DLD54_05120 CDS
T06906
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03030
DNA replication
lhs03430
Mismatch repair
lhs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DLD54_05120 (polC)
03430 Mismatch repair
DLD54_05120 (polC)
03440 Homologous recombination
DLD54_05120 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhs03032
]
DLD54_05120 (polC)
03400 DNA repair and recombination proteins [BR:
lhs03400
]
DLD54_05120 (polC)
Enzymes [BR:
lhs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DLD54_05120 (polC)
DNA replication proteins [BR:
lhs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DLD54_05120 (polC)
DNA repair and recombination proteins [BR:
lhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DLD54_05120 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
RNase_H_2
HHH_3
DEDDh_C
DUF2691
SseC
YhfH
Zn-ribbon_8
T2SSK
HMBD
Motif
Other DBs
NCBI-ProteinID:
AWN33576
LinkDB
All DBs
Position
complement(1080477..1084784)
Genome browser
AA seq
1435 aa
AA seq
DB search
MTDKNKLFLRLLQQIKFPQEFADNDLLQKGEIENVDVYAKEHRWDIHVLFTTPLKFETYN
ALNKAITANFSSFVNTRLFVRSQDGSDDYLTDYWQFAVQNSNALQQVAREFISSHKPEKE
NGRWVIPVDNLIVDGLLEQGMLDQLAEEMRNFGFFNLKFVTKVDEENSQNNLASLQKLQQ
QHEQNMQEKYDAAPPQEKPAPTSFPTKKTRYGNRKLDESIPVSQIKEVTDGSRNVVIEGN
IFNISSRELKTGSLLFTGEITDYTDSISFKKFISDDEQIQSMRDVKPGTWAKMQGSASQD
QYSHDIVFNISSFEVVKHIGRTEKFQGDEKRVELHLHTNMSQLDATNTATDFVLAAKKFG
QKAIAITDHADVQAFPEAYNAGKKNGVKIIYGVEANMIDDHALLVINPASMTYKDREFVI
FDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSITDEMVGAA
DDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAHLAEIIQPVVDTLEVSRLLHPE
QTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNKKYHEDDLGKMNDYAAHG
QVFKRARPQHMTILAKNQAGLKNMYRLVSIASTKDFYRIPRTPKSDLVKNHDGLLYGSGC
SEGDVFVAMMQKGYDEARKKARFYDYLEIQPPANYSIMIEDHLIADEKELEEILTNIYKL
GKELNKPVVATGDAHYVEEHDAIYRTILISAQRSNPDRNKKQPDMHFYTTQEMLDAFSFL
GEEVAKEIVITNPNKIAASIEEISPIKDGLYPPHIDNADEEMKHLTYDKAHELYGDPLPK
IVQDRLDMELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVN
PLPPHYRCPQCQYSQFFENGEYGSGYDLPDKKCPDCGAKLVKDGQDIPFATFLGFHGDKV
PDIDLNFSGDYQPVAHNFIRVMFGPANSYRAGTIATVADKTAYGYAKHYDEEKELNLRGA
ELDRLAAGVSGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDVNAAWLTTHFDFHSIH
DNILKFDILGHDDPTMIRMLQDLSGVDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSETG
TLGVPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEELVNNGTCKLKDVIG
CRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLEQNDKIPDWYIPSCLKIKYM
FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKKAMADIQN
QGNDASAKDKSLLTVLEIANECLERGIKIKMVDINQSEATNFKIIDQHTILAPFNAVPGL
GNNAAKQIVAARTEQKFLSKEDLANRGKVSQTIMDYLEENEVLAGMPEQNQLSLF
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
gtgactgataaaaataaactatttttaaggttattgcagcagataaagtttccgcaagaa
tttgcagataatgatttactgcaaaaaggcgaaattgagaacgtggatgtttacgctaaa
gaacacaggtgggatatccatgttctttttactacaccgttaaaatttgaaacttataat
gctttaaataaggcaataacagccaatttttcctcatttgtcaatactcgtttatttgtg
cgttctcaagatgggtcagatgactacttaactgattactggcagtttgctgtacaaaac
tctaacgcattgcagcaggtagcgcgtgaatttatttcaagtcataaaccagaaaaagaa
aatggtcgctgggtcattcctgtagacaatctaattgttgacggcttgttggaacaagga
atgcttgaccaattagctgaagaaatgagaaattttggcttttttaacttaaaatttgtg
acaaaagtagacgaggagaattcacaaaataatttagccagtttgcaaaaattgcagcag
cagcatgaacagaatatgcaggaaaaatatgatgctgcaccgcctcaggaaaaaccagct
cctacttcttttccaaccaaaaagacccgttacggtaatcgtaagctagatgaaagtata
cctgtttctcaaataaaagaagttactgacggaagtagaaatgtagttattgaaggcaat
atttttaacatttccagtcgtgaacttaaaaccggctcactactttttactggagaaata
acagattatactgactcaatttcatttaaaaaatttatttctgatgatgagcagattcaa
agcatgcgggatgtgaagccaggaacttgggctaaaatgcagggctctgcgtcacaggat
cagtatagccatgatattgtatttaacatttcgtcatttgaagtggtaaagcatataggt
aggactgaaaaatttcagggtgatgaaaaaagagttgagttgcacttacatacgaatatg
agtcaactcgatgctacgaatactgcaacggattttgtcttagcggctaaaaagtttggt
caaaaagcaatagcaataacagatcatgcggacgtacaagcttttccggaagcatataat
gcgggcaaaaaaaatggcgtaaaaataatttacggcgtggaagcaaatatgattgacgat
cacgctttgctggttattaatccagcttcgatgacatacaaagatcgtgaatttgttatt
tttgacgttgagactactggtctttcatcggtttacgatacaattattgaaatcggcgcc
gtaaaaatgaaaaacggagaggtgttagaaaggtttgacaagtttatcaatccgcatcac
ccgttaagtgagcaaactattaacctgacttcaattactgatgaaatggtaggagcagct
gatgatgaagctgtagtaattaagcaatttcaggatttctatggcgatcgtcctctttgc
gggcataatgtccagtttgacgtgggctttgttaacgcggccttgagacgagcccatcta
gcagaaattatccagcccgtggttgatacgttggaagtatcacgtttgcttcatccggaa
cagacaagacatacattagattcccttgctaaaaagtataatgttgtccttgagcaccac
cacagggctaatcaagatgcggaagcaacaggatatttaatgtttaagcttttagatgct
tttaacaaaaaataccatgaagatgatttaggcaaaatgaatgattatgctgctcatggt
caagtgtttaaaagggcacgtccacagcacatgactattctggctaaaaatcaggctggt
ttaaagaatatgtaccgtttagtttcaattgccagtaccaaagatttttaccgcattccg
cgcacacctaaatctgatttggtaaaaaatcatgatggtctgctctatggttctggttgc
tcagaaggcgacgtctttgtggcaatgatgcagaaaggttatgatgaagctcggaaaaag
gcccgtttttacgattatttagaaatacagccaccagctaattattctattatgattgaa
gatcatttaattgccgatgaaaaagagctggaagaaattttaactaatatctataaactc
ggaaaagaactgaataaacctgttgttgccactggggatgcacactatgttgaagaacac
gatgctatttaccggacaattttaatttcagctcaacgcagtaatccagatcgtaacaaa
aaacagcctgatatgcatttttataccacgcaggaaatgcttgacgcctttagtttttta
ggtgaagaagtagcaaaagaaattgtcatcactaatcctaataaaattgcggcgtctatt
gaagaaatttcaccgataaaagatggactttacccaccgcacatcgataatgctgatgaa
gaaatgaagcatttgacatacgataaagcacatgaactatatggtgatcctttgcctaaa
atcgtgcaagatcggcttgatatggaacttaattccattatttccaatggctacgctgtc
atttatttaatttcacagcgattggtagctaaatcaaataaagatggttatttggttggt
tcgcggggttctgtcggttccagtttggttgcgacaatgtctggtattactgaggtcaat
ccattaccaccacattatcgttgtccgcaatgtcagtattcccaattttttgaaaatggt
gaatatggttcaggttatgacttgcctgataaaaaatgtcctgattgtggcgcaaagttg
gttaaagatggtcaagatattccgtttgctacatttttaggctttcatggtgataaggtt
cctgatattgatttgaatttctctggtgactatcaaccggtagctcataactttattcgc
gtaatgtttggtccggcaaactcgtatcgtgccggcacaatagctacagtagccgataaa
acggcctatggttacgccaagcattatgatgaggagaaagaattaaatttgcgtggagct
gaattagaccgacttgcagctggtgtcagcggtgtcaaacgcacaactggccaacacccg
gctggtattgttgtagttccagatgatatggatatctatgattttacgcctgttcagtat
cctgcagatgatgttaatgctgcatggctgacaacacactttgactttcattcaatccat
gacaacattctaaaattcgatattttaggtcatgatgatcctactatgattagaatgttg
caagatctttctggagttgatccgttaactatcccacctgatgatccaggagtgatgtca
cttttttccagtcctaaaattctcggcgtaacgccagaacaaattcagtcagaaactgga
acattaggtgtgccggaatttggtactagatttgtccggggcatgctggaagaaactaag
ccgactactttttcagaattactgcagatttctggactatcacatggtactgatgtttgg
ctgggaaatgctgaagaattagtcaataatggtacttgcaaactgaaggatgttattggt
tgtagggacaatatcatgatggacttaattcactggggcgttaaacctgaagtagctttt
tccacaatggaatcggtacgtcatggtcgcggaattagtgacgatgacatggctgtatta
gagcaaaatgataaaatacctgattggtatattccatcatgtctgaaaattaaatatatg
tttcctaaggcacacgctactgcctacattttaatggctttaagaattgcctggtttaaa
gtttattatcctgaaatttattacacagcttatttttcagttcgggctgacttgttcgac
ttggtggctatgagtcatggtaaaaatactgttaaaaaggcaatggctgatattcaaaat
cagggtaatgatgcctcagcaaaagataaaagtttactcacagtccttgagattgctaac
gagtgcctagagcgcggaattaaaattaaaatggttgatattaaccagtctgaagccact
aattttaaaataattgatcagcatacaattttggcaccatttaatgccgtccctggatta
ggcaataatgctgcaaaacaaatagtcgctgccagaactgagcaaaagttcttgtcaaaa
gaagacctggcaaaccgaggcaaggtatctcaaacaattatggattatttggaagaaaat
gaagtattggcgggaatgccggaacaaaatcagctttcactcttttaa
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integrated database retrieval system
