Lactobacillus helsingborgensis: DLD54_05765
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Entry
DLD54_05765 CDS
T06906
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DLD54_05765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhs03400
]
DLD54_05765
Enzymes [BR:
lhs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DLD54_05765
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DLD54_05765
DNA repair and recombination proteins [BR:
lhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DLD54_05765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Ribosomal_S4e
Bcr-Abl_Oligo
DZR
ZNF512_C2HC
Motif
Other DBs
NCBI-ProteinID:
AWN33702
LinkDB
All DBs
Position
complement(1215858..1216688)
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AA seq
276 aa
AA seq
DB search
MPEMPEVETVRRTLLPLIKGKTIKEVTVWYPKIITGDAKEFKRQLVGKKITTIDRYAKYL
LIRLSGNLTVVSHLRMEGKYRLVKINTKKDKHDHVQIVFSDNSALRYNDVRKFGRMQLIK
TGTEKEKTGISKLGAEPNSAAFTVSYLQNGLARKKKNIKNTLLDQSVVAGLGNIYVDEVL
WETKIHPLSQANTIPAEKVAQLHDNINSLIELAIAERGTTIHTYLDANGKTGGFQKMLQV
YGHKGEPCVRCGTPLEKIKVNGRGTTFCPECQVIYK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaatgccagaagttgagactgtgagacggacactccttcctcttatcaaagga
aagacaatcaaagaagtaacagtctggtatccaaagattataactggtgatgcaaaggaa
tttaaacggcagttagttggtaaaaaaatcaccacaattgatcgttatgctaaatatttg
ttaattcggcttagcggcaatttaacagtagtgtcacatttgcgcatggagggtaagtat
cgtttagtcaaaataaatactaaaaaggataaacacgaccacgtgcaaattgtttttagt
gataattcggcattgcgttataatgatgtgcgtaagttcgggcgcatgcagttaattaaa
acaggaactgaaaaagaaaagacgggtattagcaaattaggtgcagaacccaactcagca
gcttttaccgtttcttatttacaaaatggtttagcacgtaaaaagaaaaatattaaaaac
acactccttgaccaatctgttgttgcaggtttgggcaatatctatgttgacgaggttttg
tgggagacaaaaattcacccattaagtcaagccaataccattcccgcagaaaaggtagca
caattgcacgataacattaattcgttaatagaattggcaattgctgaacgaggtactaca
attcatacctatctggatgcaaacggcaaaacaggtggctttcaaaaaatgttgcaggtt
tatggtcataaaggtgaaccatgtgtgcgttgtggtacaccacttgaaaaaattaaggtc
aatggacgaggaactactttttgtcctgaatgtcaggtgatttataaatga
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