Lactobacillus helsingborgensis: DLD54_06130
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Entry
DLD54_06130 CDS
T06906
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lhs
Lactobacillus helsingborgensis
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhs03019
]
DLD54_06130
03009 Ribosome biogenesis [BR:
lhs03009
]
DLD54_06130
Enzymes [BR:
lhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DLD54_06130
Messenger RNA biogenesis [BR:
lhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DLD54_06130
Ribosome biogenesis [BR:
lhs03009
]
Prokaryotic type
rRNA helicases
DLD54_06130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AWN33762
LinkDB
All DBs
Position
complement(1279168..1280529)
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AA seq
453 aa
AA seq
DB search
MNNIFENEQLNPAIRQGLKKINFVKPTKVQEKVIPVLLAHKNVVVQAVTGSGKTHAFLLP
VMNEIDTNLQYPQAVLTTPSRELAQQLYQVTRQLRDAAGLNISVAHLAGGTDRERQIEKI
NRRKPQLIIATPGRLHDFVEKKVLPLDYVKNFVIDEADMTLDMGFLSDIDFIAQRLMRDC
VLAAFSATIPVKLANFLRKYMSKPETIIIDNPAVISPTVKNDLIDIGAKKREKVLYQVLT
LGQPYLALIFANTKQTVDELAAFLTNQGLKIAKIHGGITERERKRTLREVEAGQYQYVVA
TDLAARGLDIKGVSLVVNYEIPRELEFVVHRIGRTGRNGMSGHAITLIREEEMDRILKLE
RMGIQFDFVEVKNGALVPRKHYHSRNSRQSAAHSLDNKMRGMVNKAKKKRKPGYKKKIKR
AIQQDKAQKNKIEQRNKIRKAKRQRKRRREDQS
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaataatatttttgaaaacgaacagttaaatccagcaattaggcaaggtttaaaaaag
atcaattttgttaaaccgacaaaagttcaggaaaaagtaattcccgttttattggcgcac
aaaaatgtggtggtacaggctgtcactggatctggtaaaactcacgcttttttgcttccg
gtaatgaacgaaattgacacaaacttgcaatatccccaggcagttttaacaacgcctagc
cgtgaacttgcacagcaattgtatcaagtgaccaggcagttgcgggatgcagcaggattg
aatatttctgttgcgcatttagctggcggaactgaccgtgaaaggcagatagaaaaaatt
aaccgccgtaaacctcaactcattattgctactcctggacgtttgcatgattttgtcgaa
aaaaaggttttaccgttagattatgttaaaaattttgtcattgatgaagctgatatgacg
ctggacatgggatttttaagcgatattgattttattgctcagcgtctaatgcgggattgt
gtcttagcagctttttcagccaccattccagtgaaactcgctaattttttgcgcaaatat
atgtctaaaccagagacaattatcattgataatcctgctgttatttctcccacagttaaa
aacgatttaattgatattggcgctaaaaaacgcgagaaagtactttaccaagttctaact
ctcggtcagccatatttagcattgatttttgctaatacgaaacaaacagtagacgaattg
gctgcttttcttactaatcaagggcttaaaatagctaaaatacacggcgggataactgaa
cgtgaacggaaaaggactttgcgcgaggttgaagcaggccaatatcaatacgttgtggca
actgatctcgctgctcgcggtttagatattaagggcgttagtttggttgtcaattatgaa
attccacgtgaactagaatttgtcgtccatcgtattggcaggactggtcggaatgggatg
agtggtcacgcaattactttaattcgcgaagaagaaatggatcgcattctgaaattggaa
agaatgggtattcaatttgattttgttgaagttaaaaatggtgctctggtaccacgaaag
cactaccatagtcgtaattctaggcaatcagctgctcacagtttagataataaaatgagg
ggcatggttaataaagcgaaaaagaagcgcaaacctggttataagaaaaagattaaacgt
gctattcagcaagataaagcccagaaaaataaaattgaacagcgcaataagattcgcaag
gcaaaaaggcaaagaaaaagacgtcgtgaagaccaatcttaa
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