Lactobacillus helsingborgensis: DLD54_06890
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Entry
DLD54_06890 CDS
T06906
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLD54_06890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhs03019
]
DLD54_06890
03009 Ribosome biogenesis [BR:
lhs03009
]
DLD54_06890
Enzymes [BR:
lhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DLD54_06890
Messenger RNA biogenesis [BR:
lhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DLD54_06890
Ribosome biogenesis [BR:
lhs03009
]
Prokaryotic type
rRNA helicases
DLD54_06890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWN33905
LinkDB
All DBs
Position
complement(1416113..1417597)
Genome browser
AA seq
494 aa
AA seq
DB search
MKFSELGLKDELLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFALPIL
QNLDKHNKVIQALIIEPTRELAIQTQEELFRLGRDENARVQVVYGGADIGRQIRSLKNHV
PAILVGTPGRLLDHLKRKTINLENVNTIVLDEADEMLDMGFIQDIESILSYVKNRKQTLL
FSATMPKPILNISEKFMNNPEIVRIKTKELTADLIDQYFVRAKDAEKFDIMCRLIDVESP
DLAVVFVRTKRRVDEVTRGLQARGYNAAGIHGDLSQARRITVLKRFRAGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGCSITFVTPNEIGYMRTIEQLTK
KKMTPLRPPSDDQALRGQLKVAKSKIEDIMKEDLSKYTDDADELLENYSAVDLVSAFLKN
LSKDSSSVEVKISSEKPLPYKGNGRGGRGRGRYNRGKNSRGGYRGGSRSRGSYRGGHSRR
SGNGHNFVIKNKKD
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattttcagaattaggtttaaaagatgagcttttaaaagcaattaagcgttcaggc
tttgaggaagccacgccaatccaggaacaaacaattcctttggctttagctggtaaggac
gtgattggtcaagctcaaaccggtaccggtaaaacagcagctttcgcattgccgattttg
cagaatttggataaacataataaggtaatccaagcattaattattgaaccaacaagggaa
cttgctattcaaactcaggaagaactttttagactgggtcgcgatgaaaatgcgcgtgtg
caggttgtgtatggcggtgccgatattggtcgccaaattcgctctttgaaaaatcatgtg
ccggctattttagttggtacgccgggacgtttgctcgatcacttaaaacgcaagactatt
aatttagaaaatgttaataccattgttttagatgaagctgatgaaatgctggacatgggt
tttatccaagacattgaaagtattttaagttacgttaaaaatcgcaaacaaaccttgttg
tttagtgccacaatgcctaagccgattttgaacatcagtgaaaagttcatgaacaatcct
gaaattgtgcgcattaaaactaaggaattaactgctgatttaatagaccaatattttgtc
cgtgctaaggatgcagaaaaattcgatataatgtgccggttgattgatgttgaaagtcct
gatttggcagtagtctttgtcaggactaaacgtagagttgatgaagtcacaagaggactg
caagcacgtggctataatgctgccggtattcacggtgatttgtcacaggctcgtagaatt
actgtattaaaaagattccgtgccggtaagttggatatcctagttgctacagatgtggct
gcccggggattggatatttctggtgtgacccatgtttacaactatgatattcctcaagat
cctgattcttatgttcaccggatcggtcgtactggacgtgctggtcaaaatggttgctca
attacttttgttacaccaaatgaaattggctacatgagaacaattgaacagctaactaag
aagaaaatgacaccgctgcgtccaccatctgatgatcaagcgttgcgcggtcaacttaaa
gtcgcaaagtccaagattgaagatatcatgaaagaggacttatctaaatatactgatgat
gcggacgagttattagaaaattattctgcggttgatttagtttctgcttttcttaaaaac
ttgtctaaggattcttccagtgttgaagttaagattagttccgaaaaaccattgccgtat
aaaggcaatggtcgtggtggcagaggccgtggtcgttataatcgtggtaagaatagtcgc
ggcggttatcgtggcggcagccgcagccgtggaagttatcgcggcggacattcaagaaga
tccggcaatggtcataattttgtgattaaaaacaaaaaagattaa
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