Leptopilina heterotoma: 122497680
Help
Entry
122497680 CDS
T08438
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lht
Leptopilina heterotoma
Pathway
lht03013
Nucleocytoplasmic transport
lht03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lht00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122497680
03015 mRNA surveillance pathway
122497680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lht03019
]
122497680
Enzymes [BR:
lht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122497680
5.6.2.5 RNA 5'-3' helicase
122497680
Messenger RNA biogenesis [BR:
lht03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122497680
mRNA cycle factors
Common to processing body (P body) and stress granule
122497680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
122497680
NCBI-ProteinID:
XP_043460862
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDAATQGQQS
QPVQVNGTSVASSLDLKISGAAQTLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVV
MCNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLG
FIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRAR
QISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEAD
YDKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWS
GIGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALKKFAVDDT
SVSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPG
TGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSP
VSFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICC
TCVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKI
DFPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITP
YEGQRAYLVQYMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLND
PRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAK
PKKLVNASNPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGNQNHNPYYQRNVTLDIFSR
THDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGMTPL
KSKAGARIGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggacctagtagtcaaaccctcacctttctcgacacagaggaa
acagatttaattggagcggatacacagggcagtgaatttgacttcactgattttacatta
ccctcgccgagtcaaacccaggcttcacagcatgatgctgcaacccagggccagcaaagt
caaccagtgcaggttaatggaaccagtgttgcatcgtccttggacctgaagatttctggg
gcagcacaaacactcgcggagctacaattcgaagaagaagaggaagaagcatattataat
cgtgatttaccggaacatgcgtgtaaatattgtggtattcacgaagcttcttgtgttgtg
atgtgcaatgtttgtcgcaaatggttttgcaatggtcgaggaaatacgtcaggctcgcac
attatcaatcatctcgttcgggcaaagcacaaggaagtcacattgcacagagatggacct
ttgggtgaaacggtactcgaatgttattcatgtgcagtgagaaatgtcttcgttcttggt
tttattcccgcaaaagcagactcagttgttgttcttctctgtcgacaaccatgtgctgca
caaagttccctcaaggatatgaactgggatcaagaacaatggaaaccattaatagaagat
cgtagttttctcgcatggttagtgaaaataccatcagaacaagagcaattgcgtgcaaga
caaatatcggcacaacaaataaataaactcgaagaattgtggcgcgacaatgttgatgca
acatttcaggatcttgagaagcctggtgttgatgaggagccacaacaagttttattgaga
tacgaggacggctatcaatatcaaaatatatttggtccattggtgaaattggaagcggat
tacgataagcgtttgaaagaatcacaaacgcaggagaatatcgaggtacgatgggatgtt
ggtttaaataaaaagacaattgcctattttatgcttgcaaaaactgacggtgatatgaaa
ctaatgcacggagatgaattgcgacttcgttacctcggggaattgcacaaaccctggtct
ggtattggacatgtgattaaaatacccgacaactatggcgaagaagttggtattgagttg
aaaaataattctggagcgcctacagagtgtgtcagcaatttcgttgttgattttatctgg
aagagtacgagtttcgatcgaatgcaattggctctgaagaaatttgccgttgacgataca
tcggtatcggcttacatttatcaccgtcttcttggtcacgaagtggaggaagttttgttt
cgctgtcacctaccgaaacatttcagtgcaccgaatttaccggatttgaatcgttctcaa
gtctatgccgtgaagcacgcagtacaaaggcctttgtccctaattcagggtccgccgggc
acgggaaaaacagtgacaagtgcaacaattgtttatcaactcgtgaagcaaaatggtggt
ccagtgctcgtttgcgctccctctaacacggctgtcgatcaactgaccgaaaaaatacac
aaatcgaatcttaaagttgttcgtctttgcgccaaatcgcgtgaggcgatagattcgccg
gtgagctttttggccctacacaatcagataaaaaatatggaaacaaatacggaattacaa
aaactccaacaattgaaagatgagaccggtgagctttccagtgtcgatgagaaacgttat
cgactattgaaaaaggctgccgaaaaagaattactcgaagctgccgatgtgatttgttgt
acttgcgttggagccggtgatccaagactccacagacttaaatttcattcgattttaatt
gatgagagtatgcaagcaactgaaccggaatgcatggttccagtcgtattaggagcaaag
caattgatcctcgtcggtgatcactgtcaattgggaccggtagtaatgtgtaagaaagca
gcaagagccggtctttcccaatctctatttgaacgtctcgttgtccttggaatacgaccc
ttcagacttgaagttcaatatcgaatgcatcccgatctgtcacgattcccatcgaatttc
ttctacgaaggttccctacaaaatggtgtctgtgccgatgaaagaaaactgctcaaaatc
gacttcccatggccggcgcctgataaaccaatgtttttctacgtgacacagggccaagaa
gaaattgccggcagtggaacgtcgtatttaaatcgtaccgaagcctcgaatgtcgaaaag
attacaacgcgatttttacgttgtggcgtgaaaccagaacaaattggagtaataacccct
tacgaagggcaacgagcctatttagttcaatacatgcaatatcaaggttcattgcacgcg
aaactctatcaagaaattgaggtcgcgagtgttgatgcatttcaaggaagagagaaggac
attatcatcatgtcctgtgtaagatccaatgaacatcaaggtatcggtttcttgaacgat
ccgcgaagattgaatgtcgccttaacgagagcaaagtacgggattattatcgtcggtaat
cccaaagttctctctaagcaaccgctttggaatcatttactaagtttctacaaggagcaa
aaagttttagtcgaaggtcctttaaataatctaaaagaatccatgattcaattcgcaaaa
ccgaagaaacttgtgaatgcatcaaatccaggttcacatttcatgtcaacgtcaatgtat
gacgcgagggaagcactaattcctggctcagtttacgataggtccggagcgcaagtgaat
ggcaatcagaatcacaatccttattatcagaggaatgtgacgttggacattttcagtaga
acgcatgacacgattagttatattagtcctgagagggcgcaggcagcgatgaataatgtt
ccagttccggtgggaatgttcatgaacatggcacatgtgccgccgagattttacaatcaa
catcaacaggcactccaggcgaggcaaaatcaacgcaatcgacgtggaatgacaccattg
aagagcaaagccggagcacgaattggaaaattgagtcagacagagcagaatacacaaccc
tatagtcaaccaggcttgccattgacgcaaggaacaacgcagggaatgtcgcaacctggc
ttcagtctctcgcaacctggactctcgcaagcggaactctcacaggattcattcgcagtt
ggtgaatttcaatcgcaaatggacggactattatctcaggactcgacttatcagggcgat
agaagtggcttttatcaatcaggccagtcgcaagccgggggtcaattctcccagccctat
tga
DBGET
integrated database retrieval system
