Leptopilina heterotoma: 122498576
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Entry
122498576 CDS
T08438
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lht
Leptopilina heterotoma
Pathway
lht03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lht00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122498576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lht03041
]
122498576
Enzymes [BR:
lht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122498576
Spliceosome [BR:
lht03041
]
Complex C
Other components
Step II factors
122498576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
ResIII
Flavi_DEAD
Sigma54_activ_2
AAA_30
ATPase
PhoH
Sigma54_activat
AAA_16
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122498576
NCBI-ProteinID:
XP_043462305
LinkDB
All DBs
Position
Unknown
AA seq
1126 aa
AA seq
DB search
MEDSSEDVYRLEGSQNETGGLIIRKKASDHTFKKPQTSALGLDKLAEKIRSEKEKKYRAP
QEETPTYTAGVNREARERLESRLKRQRLHAHDDDRYKDRDRNRDRKRSDDRDYHHRRHRD
YSSRSSSSRDSSRQTPRFRDEPQTPKYRAKDTTSRSNWDDDDDDGEPRRSTWDHPTPQLY
GSRSKEGNSVRSEFTPSYKYNAWSKDKKHSGATPKVEDEDKEYWEEEQKRLDREWYSLDD
GETQHFGGVSEEYTQKKEMEQEARRKKRISAQQRQINKDNELWERNRMLTSGVVCSLDID
DEPDDEAEARVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSEMAQTARKGSPLVRVY
REQKERRKAQKKHWELSGTQIGNIMGIKDKRKEEMKDEQQTDVDFKSGQKFAKHISDDGG
VNKYHNIQKQRRTLPIFAVRQELLSIIRENSIVIIVGETGSGKTTQLTQYLHEEGFSANG
IIGCTVPRRVAAMSVAKRVSDEIGSTLGEKVGYAIRFEDCTTKETVIKYMTDGILLRESL
REGDLDRYSVIIMDEAHERSLSTDVLFGLLREIITRRYDLKLIITSATMDSSKFAAFFGD
AATFHIPGRTFPVEINYSKNPVEDYVEAAVKQVLQIHLQPPRGDILVFMPGQEDIEVTCE
TLKDRLMEIETAPDLSILPIYSQLPSDLQAKIFQQSEDGMRKCVVATNIAESSLTVNGIV
FVIDSGYCKLKVYNPRIGMDALQVYPVSRANADQRSGRAGRTGPGHCFRLYTRRQYLDEL
LFTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILGALDNTGQ
LTPLGRQMAEFPLDPPQCQMLIVASQLGCTEEILIIVSMLSVPSIFYRPKGREEDSDSAR
EKFQIPESDHLTYLHVYKLWKQNNYSAMWCNEHFIHAKAMRKVREVRQQLEEILKQQKME
VVSCGTEWDMVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTPDYVV
YHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGKSNMAKKHRAEHVSEMEDQMKQA
EEEMKARAQRELEKEQASIRRQEILTPGRWEPGTPASNRSRGRLGL
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcgtcagaagacgtttataggttagaaggctcgcaaaatgaaactggtggt
ttaattattcgtaaaaaggcatcggatcatacatttaaaaaacctcagacatcagcattg
ggtcttgataaattggctgaaaaaatacgtagtgaaaaagagaagaaatatcgtgcaccc
caggaggagacaccaacttatactgctggtgttaatcgagaagctagagaacgtttggag
tcacgattaaaacgacagagattacatgctcacgatgatgatcgctataaggacagagat
agaaatcgtgacagaaaacgaagtgacgatagggattatcatcatcgtcggcatcgtgat
tacagcagtagaagtagcagtagtcgtgacagttcacgacaaacgccacgatttcgcgat
gaaccccaaacaccaaaatacagggcaaaggacacgacatcgagaagtaattgggatgat
gacgatgatgatggtgaacctcgacgttctacttgggatcatccgacacctcaactctat
ggatcacgaagtaaagagggaaatagtgtcagaagtgaatttacaccttcttataaatat
aatgcctggagtaaggacaaaaaacattcgggcgcaacgcctaaggtcgaggacgaggat
aaagaatattgggaagaagaacaaaagagattggatcgcgagtggtattcccttgacgac
ggcgagacgcaacatttcggaggcgtatccgaggagtacacccaaaagaaagaaatggaa
caagaggcacgtcgcaaaaagcgtatatcagcccaacagcgtcaaataaataaagacaat
gaattatgggaacgtaatcgaatgctcacatcaggtgtcgtttgctctctcgacattgac
gacgagccagacgacgaggccgaggcccgtgttcatctcctcgttcacaacgttgtgcca
ccatttctcgacggtcgtatcgtattcacaaagcaacccgaacccgttgtacccgtccgc
gatccaacctccgaaatggctcaaaccgctcgcaaaggttcgcccctagttcgcgtctat
cgcgagcaaaaggaacgtcgcaaggcccaaaagaagcactgggaattgagtggcacgcaa
atcggcaacattatgggcatcaaggacaagcgtaaggaggaaatgaaagacgagcaacag
accgatgtcgattttaaatcggggcagaaattcgcgaagcatatcagcgacgacggtggt
gtgaacaagtatcataatattcagaaacaacggcgaactttgccgatatttgccgtgagg
caggagttgttatcgattatcagggagaatagtattgtgattattgtcggcgagactgga
agtggaaagacgacgcaattgacgcagtatttgcacgaggagggttttagtgcgaatgga
ataattggttgtacggtgcctaggcgtgtggcggcgatgtccgtggcgaagagagtttcg
gatgagattggatcgacgcttggcgaaaaagtgggatatgcgattcgttttgaggattgt
acgacgaaggagacggttattaagtacatgacggatggtattttgctgagagagagtttg
agagagggagatttggatcggtatagtgttattataatggacgaggctcatgagcgatcg
ctgtcgactgatgtactttttggtttgttgagggagattatcactcgacgatacgatttg
aaattgattataacatcggcgactatggactcgagtaagtttgccgcattctttggcgat
gcggcgacattccacattcctggacgaacatttccggtggagattaattactcgaagaat
ccggtcgaggattatgttgaggcggctgttaagcaggtgctgcagatacatttgcaaccg
ccaaggggggatattctggtttttatgcccggacaagaggatattgaggtcacttgcgaa
acacttaaagatcggctaatggagattgaaacagctcctgatttatcgattcttccgatt
tattcccaactcccgtcggatttgcaggcgaagattttccaacaatcagaggatggaatg
cgaaaatgtgtggttgcgacgaacatcgcggaatcttctttgactgtcaatggaattgtt
tttgtcattgattccggttattgtaaattgaaagtctataatccgaggattggtatggac
gcactgcaggtgtatccggtgtcgagagctaatgccgatcaacgatctggaagagctggc
agaacgggtccgggacattgttttcgtttgtacacgagaaggcagtatttggatgaatta
ttatttacgggagtgccggaaattcagaggacaaatctggcgaatacggtattgcttcta
aaatcgttgggtgttcaagatttattggcatttcattttatggatccaccgccacaggat
aatattttaaattcactttatcaattgtggattcttggggctttggataatacgggacaa
ttgacgccattaggtcgacaaatggctgaatttccacttgatccaccgcaatgtcaaatg
ttgatcgtcgcttcgcaacttggttgcactgaggaaattttaatcattgtttccatgctc
tcggtaccgtcaattttctaccgtccaaagggccgcgaagaggattccgactcggcgcgg
gagaaatttcaaattccagaatcagatcatttgacgtatttgcacgtctataaattatgg
aagcaaaataattattcggcaatgtggtgtaatgagcattttattcacgcgaaggcaatg
cgcaaagtgcgtgaggtgcgtcaacaattggaggaaattctcaagcaacaaaaaatggaa
gtcgttagttgtggtaccgaatgggatatggtgagaaaatgtatttgctcagcgtatttt
catcaagcggcacgattaaagggcattggggaatatgtaaattgtcgtacgggaatgcct
tgtcatttgcatccaacgtcagcactttttggcatgggtttcacgcccgattatgttgtg
tatcatgaattggtgatgacagccaaggaatatatgcagtgcgtgactgctgtcgatgga
cactggttggccgaacttggtcccatgtttttcagtgtcaaggaaacgggaaagagtaat
atggctaagaaacatcgggccgagcacgtctcggaaatggaggatcagatgaagcaggcc
gaggaggaaatgaaggcgagagcgcagagggaattggagaaggagcaagcttcaatcaga
aggcaggagattttaactcccggtcgatgggaacctggaacaccagcatcaaacagaagt
cgaggacgactaggcttgtga
DBGET
integrated database retrieval system
