Leptopilina heterotoma: 122501353
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Entry
122501353 CDS
T08438
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lht
Leptopilina heterotoma
Pathway
lht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122501353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lht03019
]
122501353
Messenger RNA biogenesis [BR:
lht03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
122501353
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
122501353
NCBI-ProteinID:
XP_043466676
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MITNKEEIKDVNDGDEIDQESSNVQKLFPGFDTFDDYMKAGFNVMKEGIKITNSLPSEDN
FKYYSCFPSFNNARHYQSERILKLIQGIVGLTGASTDVNRRSIDEKLDLLVEANDIFLDR
ANVCMNEECGIKPKAEVQLIVAQAKKSSNINGSWNTVNRDASTTSGISNTQSVRLLGAKN
VQRPQLTFKDKVDNSSKPWMPRIKEKPNALKPLSIISKRGADEQVIGHPYEFELNTFQVP
NNQLKENTPVKYSSLDETPMLMIEKESDIEILLNDLQNYDEIAIDLEHHSYRSFQGITCL
MQISTRDTDYLIDTLSLRSELHRLNEVFTKPTVLKVFHGADFDIQWLQRDLSLYVVNMFD
THQAAKQLELPYLSLAYLLKSYCGIEPNKHFQLADWRIRPLPQELTKYAREDTHYLLYIK
DMLRNALIQVANGKTNVLKAIYDRSTQVCKKVYIKPIWTEETCLNMYRKSQKMFNNRQLY
ALKELHKWRDGTAREEDDSVNYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQNLLR
LHKVILKAREQPLIKPILEDDIRQRMTQRSHVAQSETWIYSPHDTPQGTEPRANLTCLLN
TKSTTETLISKKTEDHDITVFDNSSDDEECEISKQTLSVNKKLPFVSPFERYKRVMPMIA
EQEAKEREKQEIEKNKEILSNKEKNESIQRVQDHFNEIVKNKYSPNNTCLSQMHNRKRKI
HTINNDKNEKNVTYDISAQAEVFKSKVVNENMKIKEETTAEKFNVQSNVKTVEDDTLQSL
RPKKKGVKQETVKILNAKGMLPSKNFNYNAVDFSSFQGGSNIGKQDNTETVFKQNKEKHK
RTGQRKRRKI
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgattacaaataaagaggagattaaagatgtaaatgatggcgatgaaatcgatcaggaa
tcttcaaatgtgcaaaaattgtttcctggctttgatacttttgatgattatatgaaagct
ggtttcaatgttatgaaagaagggattaaaattaccaacagtctcccgtctgaagataat
tttaaatattactcatgttttccaagtttcaataatgcaagacattatcaaagtgaaaga
attttaaagttgatacaaggcattgttggtttaacaggtgcatcaaccgatgtgaatcga
cgaagtatcgatgagaaacttgatctactggtggaagctaatgacatatttttggatcga
gctaatgtctgcatgaatgaagaatgtggtataaagccaaaagcggaagtacaattgatt
gtagctcaggctaaaaaatcaagtaatattaatggaagttggaataccgtgaaccgtgat
gcaagcactacttctggaatcagcaatactcagtctgtacgattgttgggtgcgaaaaat
gtccagagaccacaattaacttttaaggataaagttgataatagttcaaaaccatggatg
ccacggattaaagagaagcctaatgctttaaaaccactttctataatttcaaaaagaggg
gcggatgaacaagtcattggccatccttatgagtttgaattgaatacatttcaagtgcca
aataatcaattgaaagaaaatacaccagtgaaatacagcagtttagatgaaactccaatg
ctaatgatagaaaaagagtcggatattgaaattttattgaatgacttgcagaattatgat
gaaatagctattgatttagagcatcattcttacagaagttttcaaggaattacgtgtctt
atgcaaatatcgacacgagatacagattatttgattgatactttgtcattacgatcagaa
ttacatagacttaatgaagtttttaccaaaccaacagtcttgaaggtatttcatggagct
gatttcgatatccagtggctgcagagggatttgtctctctacgtggtaaatatgtttgac
actcatcaggcggctaagcaactggaactaccatatctgagtttagcatatttattaaag
tcttattgcggaattgagcctaataagcactttcaattggctgattggcgcataaggcca
ttgccccaagagctcacgaaatacgccagggaagatacgcactatttgttgtacataaaa
gatatgctacggaacgctttgatacaagtcgcaaatggcaagacaaatgtcttgaaagca
atttatgatcgcagcacccaagtttgtaagaaagtctacataaagcccatttggactgag
gaaacttgtttaaacatgtatagaaagagtcaaaaaatgtttaataatcgccaactgtat
gcactcaaggaacttcataaatggagggatggaacagcaagagaggaagatgacagtgtt
aattatgttttgcccaatcacatgttattgaatatcgccgaaactcttcccagggagatg
caaggtatattggcttgctgcaatcccattccgccattggtcagacagaatttactgcga
ttgcataaagtaatactgaaagcaagagaacagccgctaataaaaccaattttggaagac
gacatcagacaacgtatgacgcagagaagtcacgtcgctcaatcagagacatggatttat
tctcctcacgatacaccgcaaggtacagaacccagagccaatttaacctgtcttttaaat
accaaatccacaacagaaacattaatctccaagaagacagaggatcatgacataacagta
tttgataattcttcagatgacgaagaatgtgagatatcgaaacaaacattatctgtcaat
aaaaaattaccttttgtaagtccctttgaaaggtataaacgtgtcatgcctatgattgct
gaacaagaggctaaagaaagggaaaaacaagagattgaaaaaaataaagagattctatca
aataaagaaaaaaatgaaagcattcaaagagtacaggatcactttaatgaaattgtaaaa
aataaatattcaccaaataatacttgtttaagtcaaatgcataacagaaaaagaaaaata
cacacgattaataatgacaaaaatgaaaaaaatgtgacatatgacattagtgcgcaagct
gaagttttcaaaagtaaagttgttaatgagaatatgaaaataaaagaagagactactgct
gaaaaatttaatgttcaatcaaatgtaaagactgtagaagacgacactttgcaatcatta
agaccgaagaaaaagggcgttaaacaagaaactgtaaagatattaaatgccaagggaatg
ttaccatcaaaaaatttcaattacaatgctgttgactttagcagttttcaaggaggtagt
aatattggtaaacaagataatacagaaacagttttcaaacaaaataaggagaaacacaag
agaacaggacaacgtaaaagaagaaagatttga
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