Leptopilina heterotoma: 122501969
Help
Entry
122501969 CDS
T08438
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lht
Leptopilina heterotoma
Pathway
lht03020
RNA polymerase
lht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122501969
09124 Replication and repair
03420 Nucleotide excision repair
122501969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lht03021
]
122501969
03400 DNA repair and recombination proteins [BR:
lht03400
]
122501969
Enzymes [BR:
lht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122501969
Transcription machinery [BR:
lht03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122501969
DNA repair and recombination proteins [BR:
lht03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122501969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122501969
NCBI-ProteinID:
XP_043467717
LinkDB
All DBs
Position
Unknown
AA seq
1414 aa
AA seq
DB search
MSTLKSKMLFNSVKRVQFEILSPDEIRRMSVTEEGIRFTETFENGKPKQGGLMDPRQGAI
DEKSRCLTCDGQLPECPGHFGHINLAKPVFHIGFLPKTIKILRCVCFFCSKLLISPNDPT
IKKIFTETEDQPGRRLTLIHDLCVTKRKCGDNSKELYGCGQCQPNFRRSGLDLHVKFTQT
GKEEEVPLTAERVHGIFKNITDEVSLILGMDPKTSRPEWMILTVLPVPPLSVRPNVKSKN
SSVTKQDDLTTILSNIVKINQLLIDKNDNNPENVKQLHFHTALLIKKDLPELSSELNFEE
NFKQKKPLKLKECFKGKKGRLRGNLLCKSVNFTARSVITPDPNLRIDQIGIPQTVAKNLT
FPEIVTPLNIEKLQKLVKKGDKSYPGAKYVVTDKGEIIDLKGNEEDSKIKCGYKVGRHIC
DNDLVVCSHKFDMKGYRVKVLPWSTFRLNVSSASAHDILFNSDEINLHVPQSYETIAEVE
NLDMIAGQVKTPKTMKSIIGVVEDALLGAFKITQKDVFIEKSDFMNLLMFVSNWNGVIPQ
PCILKPKPLWSGKQVVSLLIPKNLIYDESEFSANFEDDFIMIKKGEIITGTLCRNTVGCL
RNSIPYYCMMNFGHQVCVRFCHDLQNVINNWLLLEGHSVGIGDTIANPESYLAIQELMRG
ASFELFRIMKDACFSDMNWNDFNLDSYEALIILNKHIRNALVKFLPKTNNFLIMAKAESD
EKYKELAKIIGCKGQQTVKGERIPFGFCKRTLPHFRNEDYTPKSRGFIQNSHLSGFTPSD
FYFHAMEGRDFLIDSYKKSKDAEHIQRNLVKAMESVMIHYDGTVRNAGNQLLEINYSYNC
FYDEVPLYNTESSVTLNNEEFEKEFKFDLTNERVRDKFNKNIYLDVINSEELISELQKEF
DQLCVDKAVFRSIIPTLICPLPFNLEQMIYVAQNDFQTKNVPCDLNPLRVIQGVRDLLEK
CVIVNRDDNISREINENTHFIFRYIVRLRLCTKAVFEKYQLSSQAFEWLISEIENRFHQA
IVPPGEMVGVLAAQSICESLSHMTYHTINHTATAWFKKKQGVSRLKEIINCSKMPKYPSL
KIHLKPEIRTIDKAVYAVASRIEHTTLKNLILSSAIYYDPDINNTVIPEDQEFVNVFQEV
DDLDPSSLSPWLLRFELDRRKMLRKRIKMENIAGKLHSIFGDDLNVMFNDDSAEHLILRI
RIVNGDDDIEDKFEESKKTSDEIECEDDVFLKGIESFILNDITIHGIEMIHKVGIKRGER
HQKLKTNGTNLVKVLIDKDVDSRKTISNDIHEIFNVLGIEAARKSIENEMFDVFIYYEYH
RKRQHFILLGEVMTANGHLTSISNHGFDREDLGAFLRWSAKENEDVLFDAACHGEVDPLK
DVTGKNILGQLPRIGTGCFDLLLDNKTLLGGKDA
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtctactttaaaatcaaaaatgctttttaattcagtaaaacgagtacaatttgaaatt
ctctctcctgatgaaattcggcgtatgtcagtcactgaggaaggaattcgttttacggaa
acttttgaaaatggaaaaccaaagcaaggaggactcatggatccaagacaaggagcaatt
gacgagaaatcacgatgtctaacatgcgatggacaattacctgaatgtccaggtcatttt
ggtcatattaatttagccaaacctgtctttcacattggctttctcccaaaaacgataaaa
attctcagatgcgtctgttttttctgctcgaaactcttaatttctccaaacgatccaact
atcaagaaaatattcaccgaaacggaagatcagcctggtagacgtctgacactaattcac
gatttgtgcgtaacgaaacgaaaatgtggtgataattcaaaggaactttacggttgcggt
cagtgtcaaccgaatttcagaagatctggtctcgaccttcatgtaaaatttacacaaact
ggaaaagaagaagaagtaccgctaactgcagaaagagttcatggaattttcaaaaatatc
accgacgaagtttctttgattcttggtatggatccaaaaacctcacgtcccgaatggatg
attttgactgtcctgcccgtacctccattgtcagttcgtccaaacgttaaatcgaaaaat
tcatctgttacgaaacaagacgatttaacaacaatattatcaaacatcgttaaaataaat
caattactaatcgacaaaaatgataataatccagaaaatgtaaaacaactgcactttcac
actgcccttctgattaagaaggatcttccagaattgtcttcagaattaaattttgaagaa
aattttaaacaaaagaaaccattgaaattaaaagaatgttttaaaggcaaaaaaggaaga
cttcgtggtaatctactgtgtaaaagtgtaaatttcacagcacgctctgtaatcaccccg
gatcccaatctgcgaatcgatcaaataggcatacctcaaactgtcgccaaaaatttgaca
tttcccgaaattgtcacaccactaaatatcgaaaaattacaaaaacttgtcaaaaagggc
gataaaagttatccaggagctaaatatgttgtcacagacaaaggcgaaataatagatctc
aaaggaaacgaagaggatagtaaaattaaatgtggatataaggttggaagacacatttgt
gacaatgatttagttgtttgtagtcataaatttgatatgaagggttaccgagttaaagta
ttaccttggagtacatttcgattaaatgtcagtagtgcatcggcccacgatattcttttc
aattccgacgaaataaacttgcacgttccccagtcatacgaaactatagccgaagtggaa
aatcttgatatgatagcgggtcaagttaagacaccaaaaacgatgaaatcgataataggt
gttgtcgaggatgcattacttggcgcgtttaaaataacccaaaaggatgttttcattgaa
aagagtgatttcatgaatcttctaatgttcgtctcgaattggaatggagtaataccacaa
ccttgtattttaaaaccaaaacccctttggagtggaaaacaagtagtttctctattaatt
ccgaaaaacttaatttacgatgagtcagagttttcggctaattttgaggatgattttata
atgatcaaaaagggagaaattataacaggtactctttgtcgcaacacagttggttgctta
cgcaattccattccgtattattgtatgatgaactttggtcatcaagtgtgtgtgagattt
tgtcatgatcttcaaaatgtcattaacaattggctattattagagggacattcagttggt
attggtgacactattgccaatcctgagagttatttagcaattcaggaattaatgagaggt
gcctcatttgagctttttagaattatgaaagatgcttgtttttcagatatgaattggaat
gatttcaatttagattcctatgaagctctgataatattaaataaacatattcgcaatgca
ttagtaaaatttttaccaaaaacgaacaattttttgataatggcaaaagcagaatcagat
gaaaaatataaggaactggcaaaaattattggctgcaagggacaacaaactgtgaagggt
gaacgtataccttttggcttttgtaaacgtactttaccacactttagaaatgaagattat
acacccaagtcgagaggtttcatccaaaattctcatctctctggtttcacaccttctgat
ttttattttcacgctatggagggtcgagattttctcatcgattcttacaagaaatctaaa
gatgcggaacacatacaacgtaatttagtgaaggctatggaatcagtaatgatacattat
gatggaacggtgagaaatgcagggaatcagttgcttgaaatcaattatagttataattgt
ttttatgatgaggttcccttatacaatactgaaagctctgttacactgaataatgaagaa
tttgaaaaagaattcaaattcgatctaacaaatgaacgtgtacgtgataaatttaataaa
aacatttatctcgatgtgatcaattcagaagaactcatttccgaattgcaaaaagaattt
gatcaattatgtgtagataaagctgtgttcagaagtatcatacctactttgatctgtcca
cttccttttaatttggaacaaatgatttatgttgcacaaaatgattttcagacgaaaaat
gtgccttgtgatttgaatccgttgagggttattcaaggtgttagggatcttctagaaaaa
tgcgttattgttaatagagatgataacatcagcagagaaataaatgagaacacgcatttt
atatttcgatatatcgtgagattgagattgtgcaccaaagccgtctttgaaaaatatcaa
ctgtcaagccaagccttcgagtggttgattagtgaaatagaaaatcggttccatcaggca
attgttccacctggtgaaatggttggtgttttagcagcacaatcaatttgtgagtctctt
tcacacatgacctatcacactattaaccatactgctacagcatggttcaaaaagaagcaa
ggtgtctctagattaaaagaaattatcaattgcagtaaaatgccgaaatatccatcacta
aaaattcatctaaaaccagaaattcgaactattgataaagcagtttatgcagttgccagt
cgaatagaacacacgacactgaaaaatttgatattaagttctgcaatttattacgatcct
gatatcaacaataccgttattcctgaggatcaagaattcgtaaatgtctttcaagaagtt
gacgacctcgatccatcgagtttatcgccatggttgcttcgcttcgaattggatcgaaga
aaaatgctacgaaaaagaataaaaatggaaaatattgctggtaaactgcattcaatattt
ggcgacgacttgaatgtcatgtttaatgacgacagtgcggagcatttgattcttagaatt
cgaatagtcaacggtgatgatgatattgaagataaatttgaagagagcaagaaaacgtca
gatgagattgaatgtgaagatgatgtctttttgaaaggcatcgagtcatttattttgaat
gacattacaatacatggtattgaaatgattcataaagtgggcataaagagaggagaacgt
catcagaaactgaaaactaatggtacaaatttagtgaaagtattaatcgataaagatgtt
gattcaaggaaaacaattagcaacgatattcacgagatttttaatgtactgggtattgag
gctgctagaaaatctatagagaatgaaatgtttgacgtttttatttattacgaatatcat
cgaaagcggcaacattttattctgctgggtgaagttatgactgctaatggacatctgacg
tctatcagtaatcacggttttgatagagaagatcttggagcattcctgagatggtctgcg
aaagaaaatgaagacgttttgtttgatgctgcttgtcatggagaggtcgatcctctgaaa
gacgtcacaggaaaaaatattctgggacaattgcctcgcattggcactggttgctttgat
ttgttacttgacaataaaactctactaggaggaaaggatgcataa
DBGET
integrated database retrieval system
