Leptopilina heterotoma: 122505047
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Entry
122505047 CDS
T08438
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lht
Leptopilina heterotoma
Pathway
lht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122505047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lht03019
]
122505047
Enzymes [BR:
lht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122505047
Messenger RNA biogenesis [BR:
lht03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122505047
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
NAF
BSMAP
Motif
Other DBs
NCBI-GeneID:
122505047
NCBI-ProteinID:
XP_043472399
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MEVVRTNFQDVMEELDKVLEEASFLCIDTEFTGLNVGPDSTPFDSPAQYYSRIRSGSMNF
LLVQFGLSVFTFENKTKKYSQRSYNFYAFPHPLNRGAPDCRFICQASSISFLASQGFDFN
KLFNSGIPFLTKNEEERLQKKMEDKQKIREEGQEFIPIPDHDKPQIEEILSKISEFIKSD
AEKLSIDRCNAFIRRLVYQEVKRKWPKKLHLDFKAEGLNQILEVTKVGTKEEEEKKVLEQ
KEKERLEMKEAIGLSALLKKISSSGKLIVGHNMLLDLCHVIRQFFNPLPETYSEFKALVH
GLFPKIIDTKIISQSTQLKDKVPLTNLQYLLDTCSKEPFSIPEVIPVKDRSYSTSIEKSH
EAGYDAYMTGLCFIAMKNYLGTLESPAVDTVLCDSPLLNPFLNKLVIVRLKDVPHINLVG
NDPTPSRDHVFYITFPREWKGNDISKLFTSYGGVFVSWLSDTSAFVSLYKRDQVKNVLKN
VKNTKFFHIKKFAEHQKAIEPAEQGLRKRKLESTEIDKNQANGSEKNTEEGWETVEGIQS
FFTHLSRRDFFSILVLIFVIYLYIFVGVNKK
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgttcgtacaaactttcaagatgttatggaggaattagacaaggttctggaa
gaagcttcatttctttgcattgacacagaatttacgggtttaaatgtgggacccgacagt
acacctttcgattcaccagcacagtattattcaagaataagatcaggttcaatgaatttt
ctcttggttcaatttggactttcagtttttacattcgagaataaaacgaaaaaatacagt
caacgttcttataatttttatgcatttccacatcctcttaatcgtggcgcacctgattgt
cggtttatttgccaagcttcgagcatatcattcctcgccagccaaggttttgatttcaat
aaattattcaactccggcattccatttttaacaaaaaatgaagaggaaagactacaaaag
aaaatggaggataaacagaaaattcgtgaggagggacaagaatttattcctattcccgat
cacgataagcctcaaatcgaggaaattctatcgaaaattagcgagttcattaaatcggac
gcagaaaagctttcaatcgatagatgtaatgcatttattcgacgacttgtttatcaagaa
gtaaagagaaaatggccgaagaagcttcatttagattttaaagcagaaggtctgaaccaa
attttagaagtgacgaaagtgggaacaaaagaggaggaagagaaaaaagttcttgaacaa
aaagaaaaggaacgattagagatgaaagaggcaattggcctaagcgcattgttaaagaaa
atctctagttcgggaaaattaattgttggacacaatatgttactggatctgtgtcacgtt
attcgacaattttttaatccattacccgaaacttattctgaatttaaagctctcgtccat
ggactttttcccaaaataattgacacgaaaataatcagtcaatcgacgcaattgaaagat
aaagttcctttaacgaatctacagtatcttttggatacttgtagtaaagagccgttttca
attccggaggtgattccggtaaaagatcgcagttattcaacttcgatagaaaaaagtcac
gaagccggatatgacgcatatatgactggcttatgcttcatagccatgaaaaattatctc
ggtactttggaaagtcctgcagtagatacggttctttgcgactcgccgttattaaatccg
tttttgaacaaactcgtcatcgttaggttaaaagacgtgccacatattaacttagttgga
aatgatcccacacccagtagagatcatgtattttacataacgtttccacgtgaatggaaa
ggaaatgacatatcaaaacttttcacttcttatggtggtgtttttgtttcctggttgtct
gatacgtcggcctttgttagtttgtacaaaagagatcaagtgaaaaatgttctcaagaat
gtgaagaatacgaaatttttccatattaaaaaattcgccgaacatcaaaaagcaatagaa
ccagcggagcaaggactacgaaaacgtaaattagaatcgaccgagattgacaagaaccag
gcgaatggttctgaaaaaaatactgaagaaggttgggaaacagttgaaggtattcaaagt
ttctttacacatttaagtcgtagagatttcttttcaattctagtactaatttttgtgatc
tatctttacatttttgtgggagtaaacaaaaaatag
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