Leptopilina heterotoma: 122505074
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Entry
122505074 CDS
T08438
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lht
Leptopilina heterotoma
Pathway
lht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122505074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lht03019
]
122505074
Enzymes [BR:
lht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122505074
Messenger RNA biogenesis [BR:
lht03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122505074
mRNA degradation factors
3'-5' decay
Ski complex
122505074
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
ATPase_2
Motif
Other DBs
NCBI-GeneID:
122505074
NCBI-ProteinID:
XP_043472430
LinkDB
All DBs
Position
Unknown
AA seq
1248 aa
AA seq
DB search
MSTKTKHFVEELFLPFGPPPIIADIKSELKAFIEYPDNLPIYNVDNIQCYWSREPDILAL
LNADLAPVGTCIRFRRDPITGKIGDMLEVTLQGTGENAKNSMLMTRAPGPPAEGVRGNTS
NFLFWPGGFDEAKIIEEPILIDIDFERNLETLAKGFKCGMDFETDNYTPKNVQFESMSQM
CVKECLEQVNCLDLMVIIDKEANSLDFWAKPVLHRIAESKSEEKISTNIDDILSSIDTIT
KPVANPKLPVLKITEEGKSFLQAEWAEQLDVTITITDFEKRVMNPAINFKYELDNFQKQA
IIKLEEDCNVFVAAHTSAGKTTVAEYAIALSQMHMTRTIYTSPIKALSNQKFREFKEKFD
NVGLITGDLQINQTASCLIMTTEILLSMLYCASEVLRDLEYVIFDEVHYINNEDRGHVWE
EIVILLPRTVNIVMLSATVPNPLKFANWVGQIKKRKMYVISTVRRPVPLQHYLYVGSNMK
TKDSCYLILDTDGQFSMEGWRQANAQRQRELKQSLDKKGMKKFKETKKQNKISLETDVSS
QENEETEEIKPSMISSKERAMWIAFLKYLQQQDKLPVVVFALSRSRCDKTADSLQHQNVS
LITNDEKNNVTNFFKKSIKRLKGSDAQLPQVQRMQKLLEHGIGIHHSGILPILKEIVELL
FQQGLVKMLFATETFAMGVNMPARTVVFDAVRKYDGSKFRALHPTEYIQMAGRAGRRGHD
TTGTVMLLCKADVPNFIDLQAMMCGEPQSLESQFKITYSMVLHLRRLSETVSVKDMMRRS
FKEASSLIREKQVKANLQVIEETLAKTPTLSPNQEKLAEFYETAMEYLRIWKKLRPEMLS
AKRASKNLSEGRVLLISYKNHYNKLALLLDKRKQNENILYKILILTSEKEMCEEEKPDNW
YRIIALTKKQLYSTAQVPAHEVLLIDESSILEITNCTIKTDFRCVIADWEKRQIPRFKDC
SPGPTFSAVVQELLKLSQDAVSNPEDLLPYTEMIINKIDLKPEEKKLKKLKHILNCSSII
QVNNLEEQFGEAFYRKELEEKKKELLIKLSDEQLRDYPDYINRVNILKDLGYIDQNERVT
LKGRVALEMGICELFLTELVFKNILTDWSPAEIAALLSALVFQQRTEEPNMSLNKRLKDL
QKIVSDEYEILKTKEMKYNLTPAPPLNFGLVKVVYQWARAESFANIMNLTDVQEGIIVRC
IQQLNETLRDVKNAAIIIGNPILKEKMDEASSAIKRDIVFTASLYTQD
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaaaaacaaagcattttgttgaagagttatttttgccatttggaccacctcct
ataatagctgatattaaaagtgaattaaaagcatttattgaatatcctgataatcttcct
atttataatgtcgataatatacaatgctattggtcaagagaaccagatattttggcttta
ctaaatgctgatttggcgccagttggaacttgcattaggttcagaagagatccaattaca
ggaaagattggagatatgttggaagttacccttcaaggaactggagaaaatgcaaaaaat
tctatgttaatgacgagagcacctggaccaccagctgaaggagttagaggtaataccagc
aatttcttattttggcctggtggttttgatgaagccaaaataattgaagaacctatatta
attgatatcgactttgaacgcaatcttgaaactttagctaaaggtttcaaatgtggcatg
gactttgaaactgacaattatactccaaaaaatgttcagtttgaaagtatgtcgcaaatg
tgtgttaaggaatgtttagaacaagtgaattgtttagatttaatggtaatcattgacaag
gaagcaaattcactggatttttgggcaaaacctgtattgcatagaattgcagaatccaag
tctgaagaaaaaatttcaacaaacatagatgatatattatcttcgatagacacgattact
aaacctgttgcaaaccccaaacttcctgtattgaaaattactgaagagggaaaaagtttc
ttacaggcagaatgggctgaacaattggatgtgacaatcactattacagattttgaaaaa
agagttatgaacccagccattaatttcaaatatgaactagataactttcaaaagcaagca
attataaaattggaagaggactgtaatgtttttgtagctgctcatacgtctgctggtaaa
acaacagtagcagaatatgcaatagcattgagtcaaatgcatatgactaggaccatttat
acctcgcctataaaagcattgtctaatcaaaagtttcgtgaattcaaagaaaaatttgat
aatgttggactcattactggagatttacaaataaatcaaactgcttcatgtttaataatg
actacagaaattttattatcaatgttgtattgcgcctctgaagttctccgagatttggaa
tacgttatttttgacgaagttcattacataaataacgaggatagaggacacgtttgggaa
gaaatagttattttactacctcggactgtgaatattgttatgctgtctgcaacagtacct
aatcctttgaaatttgctaattgggttggtcagataaaaaaaagaaagatgtatgtgatc
agtacagtgagaagaccagtaccgttgcaacattatttatatgtagggagcaatatgaaa
acaaaagacagttgttatctaattcttgatactgatggtcaattttctatggaaggatgg
cgacaggcaaatgcgcaacgacaacgtgaacttaaacaaagtttagacaaaaaaggtatg
aaaaaatttaaggaaactaagaaacagaataaaatttctcttgaaacagatgtgtcatcc
caggaaaatgaagaaactgaagaaataaaaccttcgatgatttcatcaaaagaacgagca
atgtggattgcatttcttaaataccttcaacagcaggataaattgccagttgttgttttc
gcactttctcgaagtcgttgtgataaaacagcggattctttgcaacatcaaaatgtgtca
ttgattacgaatgatgaaaaaaataacgtaaccaatttctttaaaaaatctattaaaagg
ttaaaaggatcagatgcacaattgcctcaagttcaaagaatgcaaaaacttttggaacat
ggaattggtattcatcacagtggaattttgcctattttaaaagaaattgttgagttatta
tttcaacaaggcttagtaaagatgctctttgctactgaaacatttgccatgggtgtcaac
atgcctgctagaactgttgtttttgatgctgtcagaaaatatgatggttctaagtttcgg
gctctacatccaacggagtatattcaaatggctggaagggctggacgaagaggtcatgat
actacgggaactgtcatgctactatgcaaagcagatgttcctaatttcattgacttgcaa
gcaatgatgtgtggcgaaccgcaaagtttggagtctcagtttaaaattacatactcaatg
gttttacatttgagaagactcagcgaaacggtttcagtaaaagatatgatgcgcagatct
tttaaagaagcaagttcgttaataagagaaaaacaagtgaaagccaatttgcaagtgatt
gaagaaacattagcaaaaaccccgacactatccccgaatcaagaaaagttagcagagttt
tatgaaactgctatggagtatttgcgaatttggaagaaacttagaccagagatgctttct
gcaaaaagagcatccaagaacctttcagaaggtcgtgttttgcttatatcttacaaaaat
cactataataaactcgctctcttgcttgacaagagaaaacagaatgagaatattttatac
aaaatattaattcttacaagtgaaaaggagatgtgcgaagaggagaaacctgataactgg
tatagaataatagctctcacgaaaaaacaattatactcaacagcccaagtgcctgcacat
gaagttctcttgatagacgagtctagtattttggaaataactaattgcacaattaaaaca
gactttcgctgtgtgatagctgattgggaaaaacgtcaaattccaagattcaaagactgt
tctcctggtccaacgtttagtgcagttgtacaagagttattgaaattatcccaggatgct
gtatcaaatccagaagatttattgccgtatacagaaatgataataaataagatagactta
aaaccagaagaaaagaagttaaaaaagttaaaacatattcttaactgtagttccattatt
caagttaacaatttggaagagcaatttggagaagctttttatagaaaagaacttgaggag
aagaaaaaggaattattgattaaattaagtgacgagcaattaagagattatccagattat
ataaatcgagttaatattttaaaggatcttggctatattgatcaaaacgaaagagtcaca
ttaaaaggaagagttgcgcttgaaatgggaatatgtgaattatttttaaccgaactggtg
tttaaaaatatccttactgattggagtccagctgaaatagcagctttactttcagcttta
gttttccaacaacgaacagaagaacctaacatgagcctcaacaagaggctaaaagacttg
caaaaaatagtgtcagacgaatatgaaatcttaaaaacaaaggaaatgaagtataactta
acaccggctccacctttaaatttcggtcttgtaaaagttgtataccaatgggctagagca
gagtcatttgctaatattatgaatttaactgatgttcaagagggtattatcgtcagatgt
attcaacaattaaatgagactcttcgcgacgtaaagaatgctgctatcattataggaaat
ccgattttgaaagaaaaaatggacgaagcatcaagtgctatcaaacgagatattgttttc
acagcttcactctatacccaagattga
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integrated database retrieval system
