Leptopilina heterotoma: 122506849
Help
Entry
122506849 CDS
T08438
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lht
Leptopilina heterotoma
Pathway
lht04382
Cornified envelope formation
lht04512
ECM-receptor interaction
lht04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lht00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122506849
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122506849
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122506849
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lht04147
]
122506849
00536 Glycosaminoglycan binding proteins [BR:
lht00536
]
122506849
Exosome [BR:
lht04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122506849
Glycosaminoglycan binding proteins [BR:
lht00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122506849
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122506849
NCBI-ProteinID:
XP_043475149
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MIRPGLRWLATLACLATLVKGQNLSDRQRFQHRGDIEKLPNADEDDTYRPYEEEQPDDYD
DGNDRNYETSYNSGSSWNQTYYNNNREGYGDSRNYGETYDRNFHRGQQGSSQYDRDRYSP
SGAEREDGGGRYAVYPHPGGAKNCTGGGNCAPKCYAEKGSRGPPGTSGIQGPRGQTGFPG
IEGLVGQKGDKGDPGPQGPRGYKGDRGMTGVPGYPGIDGVPGVQGPPGNSGLPGRDGCNG
TDGLPGIDGRHGEPGPRGLPGISGPKGEKGTPAYVGPFPVGEKGEPGLDGVRGPPGNPGP
EGLRGPSGPKGERGQYGLPGSLGQKGEKGHMGLGFEGPKGDKGLRGPPGPPGKLETSTGT
KTTVGSPGEPGPKGDRGDRGTEGPRGEAGPPGDYGLSGAAGMKGEKGLPGVPGVRGRDGF
SGPPGPLGLKGDRGYDGLPGLDGRPGAKGHPGNDGPMGISGIRGPPGPPGGGKGRPGPPG
EKGPRGFPGPVGPRGSDGFPGEPGVRGPIGLQGGPGLSGIPGPEGLPGEKGHKGESGLPG
FPGEIGSRGFDGAPGPAGLRGPPGEKGLSIIGPKGLDGLPGNDGGKGQKGERGYQGVRGR
PGDSLEGIPGSPGAPGQPGEVGTSGKDGMPGFPGLPGEKGDIGGRCIDCTPGHPGLKGER
GFDGAPGIPGLRGPPGELGPFGEPGIDGNPGLQGPPGFPGKDGLPGAPGGQGQPGTPAFI
SRDALKPIKGDKGVRGDAGRVGPFGPEGPIGEKGRQGYEGFPGLKGEPGDRGFPGQDGVA
GRPGAPGWKGERGLSIKGEPGEPGRDGYFGMKGDPGFPGDKGQAGECAPCNITEGLKGDR
GEQGTKGEPGPPGRDGPSGDKGDMGLEGLIGATGSIGPPGPPGPRGEPGPRGDKGNMGPF
GFPGEPGKEGARGFPGQAAPKGVKGEPGVSVKGSIGFPGPQGIKGERGLPGPPGKEGPDG
PPGLPGFTGEKGDGGVPGLDGLPGAPGDKGDTGPVGAVGPPGVPGMPGSDGVKGEPGLTG
ESGREGLPGFPGAKGERGELGSDGLKGYPGRRGSPGLPGTPGEEGRPGLKGETGPKGDYG
FPGLPGIEGKVGRPGLPGLKGDVGYPGPPGPHGPHGFEGMKGDHGPPGFPGRKGEPGQVS
EKGQKGEVGMPGIRGPMGPPGRDGLDGVKGERGLVIFGRDGVPGVKGDAGLPGRPGLIGL
QGEKGDAGVRGFVGQKGDTGYGGLPGEPGTPGIDGLPGDNGEIGPMGPPGFPGLVGDVGL
PGEPGLDGIKGDRGPLGPPGAFGDMGPEGEKGDRGPPGLTLNTKGMKGEPGLPGLPGDFG
QKGDRGFDGVAGFVGEKGDRGEVGLIGNPGPPGPLGPKGDHGPEGLPGLTGVTVKGEKGL
PGRLGKHGKDGFPGIPGEKGESGLPGLPGHKGDRGSYGPVGPQGEKGDLGLSGAPGLPGR
DGAPGIEGMPGLSGDRGPKGDQGPPGPFGVPGQKGDQGVAGLNGLDGLPGEKGDRGWNGP
DGIPGFPGEKGDAGYPGSPGLMGAVGFAGIKGDKGDDCETMPPGPKGDRGYPGSPGMPGL
AGEKGMSGPPGFPGRDGAKGDTGFVGPPGSPGLPGQPGLDGPPGQAGLSGSPGFPGSKGE
AGAPCEITPDYLTGILLVKHSQSQTVPTCEREHIKLWDGYSLLFTDGDERAHSQDLGYAG
SCVRKFSTMPFLFCDVNDVCHYASRNDRSYWLSTNSPIPMMPVEESGIEEYISRCVVCEV
PASVLAVHSQSTAIPDCPNGWSNLWIGYSFIMHTGAGAQGGGQSLSSPGSCLEDFRAVPF
IECNGAKGHCHYYTNEYSFWMATIQDNQQFQKPQKETIKAGNLRNRISRCAVCIRNT
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atgatccggccgggattgcgatggctcgcgaccctggcttgcctcgccactttagtaaaa
gggcaaaatttatcggatcgacaaaggtttcaacacagaggtgacattgagaaacttccg
aatgcggatgaagatgatacatatcggccttatgaagaagaacaacccgacgattatgat
gatggaaacgacaggaactacgaaacatcatacaatagcggttcctcatggaatcaaacg
tactacaataacaatagagaaggatatggagactcgagaaattatggcgaaacttatgac
cgaaattttcatcgaggtcaacaaggctcttcgcaatatgatcgagatcgttactcacca
tcgggagcggaaagagaagacggcggcggaagatacgcggtctatccgcatcccggaggt
gcaaaaaattgtacaggaggtggaaattgcgctccgaaatgctacgccgaaaagggatca
cgaggtcctcctggtacctctggaattcaaggacctcggggtcaaaccggatttcctgga
atagaaggtctcgttggtcagaaaggtgataaaggtgatcccggccctcaaggaccaaga
ggatataagggtgatcgaggtatgactggagttcctggataccctggaatcgacggtgtt
ccaggagttcaaggaccaccaggaaattcaggtttacctggtcgcgatggttgcaatgga
actgatggactaccgggtattgatggtcgtcatggagaaccgggtccgcgaggtttaccc
ggaatttcaggaccaaaaggagaaaagggaacgccagcttacgtaggaccatttccggtg
ggagaaaagggtgaaccaggtctcgacggggtccgcggtccacctggaaatccaggacca
gaaggactccgtggtccttctggaccgaaaggagaacgtggacaatacggtttaccagga
agtcttgggcaaaaaggtgaaaaaggtcacatgggtcttggcttcgagggaccaaaggga
gataaaggtctaagaggaccgccgggacctccaggaaaattggagacatcaaccggaacg
aaaacaacagtcggatcaccaggcgaaccgggaccaaaaggagaccgaggtgatagaggt
acagagggaccaagaggagaagcaggtcctccaggtgattacggtctttcaggagctgcc
ggaatgaagggtgaaaaaggtctacctggagttccaggagttcggggcagagatggattt
tcgggtcctccaggaccccttggcttaaagggtgacagaggttacgatggtcttccaggt
cttgatggacgtccgggagctaaaggtcatcccggaaatgatggtccaatgggtatttcc
ggtattcgcggacctccaggaccacctggaggtggcaaaggacgacccggtcccccggga
gaaaagggaccaagaggtttccctggtccagtgggacccagaggatccgatggtttccct
ggcgaacctggagtgagaggaccaattggtttacaaggcggacctgggctctctggaatt
ccgggacccgaaggactcccaggtgaaaagggacacaaaggagagtctggtctacctgga
tttccaggtgaaatcggatcacgtggatttgacggagctcctggtccagccggactccga
ggtcctccaggagaaaaaggactatcaatcataggacccaaaggattggacggtctaccc
ggcaacgacggtggaaagggccaaaagggagagaggggttatcagggtgtaagaggtcgt
ccaggcgattcattggaaggaattccaggttcgccaggagcgcctggacagcccggcgaa
gttggaacatcgggaaaagacggtatgcccggatttccgggacttcctggcgagaagggt
gacattggcggaagatgcatagactgtacacctggacatccgggtctcaagggagagaga
ggatttgatggagcgccaggtattccgggacttcgaggaccacctggtgaacttggacca
tttggtgaacccggaatagacggaaatcctggacttcaaggaccacctggttttcccgga
aaagatggcttgcctggagcacctggaggacaaggacagcctggaacacctgcatttatt
tccagagatgcattgaaaccaattaagggcgacaagggcgttcgaggagatgcgggacgt
gtgggaccctttggtcccgaaggacctattggcgagaaaggaagacaaggatacgaagga
ttccctggtcttaagggagaacctggagatcgcggttttcctggtcaggatggagtcgct
ggaagaccaggtgctcctgggtggaagggagagagaggtttgagcataaagggagaacct
ggagaaccaggtcgggatggctatttcggaatgaaaggtgacccaggttttcctggcgac
aaaggacaagctggtgagtgtgcaccgtgcaacattacggaaggtctgaaaggtgatcga
ggagagcaaggtacgaaaggtgaacccggaccaccgggaagagatggaccatcgggagat
aagggagatatgggtctcgaaggacttatcggtgctaccggatcaattggaccaccagga
ccacctggtcccagaggagaaccaggacccaggggagacaagggtaacatgggacccttt
ggtttccctggtgaaccaggaaaagagggagctagaggatttcctggtcaggctgcaccc
aaaggtgttaaaggagaacccggagtgtctgtcaagggaagcattggattcccaggaccg
cagggaataaagggcgagagaggacttccaggaccacctggaaaagaagggccggatgga
ccacccggtttgccaggtttcactggcgagaagggggatggcggcgtacccggattggac
ggtctaccaggagcacctggagacaagggcgatactgggccggttggagctgttggacca
cctggagtaccgggaatgcccggcagtgatggagttaaaggtgaacctggtctcactgga
gaatcgggtagagaaggtttacccggattccccggagcgaagggcgaaagaggcgaactc
ggtagtgacggactgaagggctatccaggacgaagaggatctcctggtcttccaggaact
ccaggcgaagagggtcgtccaggtttgaagggtgagaccggaccgaaaggagattacgga
tttcctggactgccaggaattgagggaaaagtcggaagacctggactgcctggactaaaa
ggagatgttggatatccaggacctccgggtccacacggtcctcacggattcgaaggaatg
aaaggagatcatggtcctcctggtttccctggaagaaaaggagaaccaggtcaagtttct
gagaagggccaaaagggagaagttggtatgcctggaattcgtggtcctatgggtccacct
ggtagagatggactagatggagtgaagggcgaaaggggattggtgatatttggacgagat
ggcgtgccgggtgtgaaaggtgatgccggattacctggtcgtccaggattaattggactt
cagggagagaagggcgatgctggcgttcgtggtttcgttggtcaaaagggagacactgga
tatgggggtcttcctggagaacctggaacacctggaattgatggtttgcctggcgataat
ggagagattggaccgatgggtccacctggtttcccgggactggtgggagatgttggtctt
cctggagaacctggtttagatggcatcaaaggagacagaggaccattaggtccacctgga
gcatttggagatatgggaccagagggagagaagggtgatcgaggaccaccgggactgaca
ctaaacaccaagggaatgaaaggcgaacccggtcttccgggtcttccgggtgactttgga
cagaagggtgacagaggttttgacggagttgccggattcgtgggcgaaaagggagacaga
ggagaagtcggtcttataggaaatccaggacctccgggtccgttgggaccgaaaggagat
cacggtccagagggacttcctggtcttacaggtgtcaccgtaaagggagaaaagggtctt
cctggtcgtttgggcaagcacggaaaggacggtttcccgggaatccctggcgagaaggga
gagtcaggtttgcctggattgcccggtcataagggagatcgtggatcatacggtccagtg
ggtcctcagggtgagaagggtgatttgggattatccggtgcgcctggtttacccggtcgg
gatggtgctcctggaattgagggaatgcctggactttctggcgataggggacctaaggga
gatcaaggaccaccgggacctttcggtgttcctggccaaaagggtgatcaaggagtggct
ggattgaacggtttggacggtttacccggcgagaagggagatcgaggctggaatggtcct
gacggaattccaggcttcccgggtgaaaagggtgatgctggatatccgggttcacctgga
ctgatgggagctgtcggtttcgctggtatcaagggagataagggagacgactgcgaaaca
atgccacctggaccaaagggagatcgaggctatccgggatcccctggaatgcccggactg
gcaggtgagaagggaatgtctggaccaccaggtttccctggcagagatggggcgaaggga
gacactggatttgttggtccgccaggatcgcctggtttgcccggacaacccggattagat
ggaccccctggacaagctggactttcgggttcgcctggattccccggttctaagggcgaa
gcaggagcaccttgtgaaattactccagattatttgactggaattttattagtcaaacac
agtcagagtcaaactgttccaacttgcgaacgtgaacatatcaaattatgggatggatac
agtctcttatttactgatggggacgaaagggcgcattctcaagatttaggttatgctggc
tcgtgtgtgagaaagttctcgacgatgccgttcttgttctgcgacgtcaatgacgtctgt
cactatgcaagtcgaaatgatcgttcttattggctctccaccaatagtccaataccaatg
atgcctgttgaagaatcaggcattgaagaatatatttccagatgtgtcgtatgtgaagtg
ccagcaagtgtcttagcggtccacagtcaatcaactgccattccagattgtccaaatggc
tggtccaatctctggattggatacagtttcataatgcacacgggcgctggagcgcagggt
ggaggacaatctttatctagtcctggatcctgtctagaggacttccgagcagttccattt
atcgaatgtaacggtgccaaaggacactgccattattataccaacgagtacagtttttgg
atggcaacaatccaagacaatcaacaattccagaagcctcaaaaggagacaataaaagct
ggaaatctacgaaatcgaataagtcgatgtgccgtgtgtataagaaacacatga
DBGET
integrated database retrieval system
