Linepithema humile (Argentine ant): 105667401
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Entry
105667401 CDS
T04898
Symbol
hay
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03022
Basal transcription factors
lhu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105667401 (hay)
09124 Replication and repair
03420 Nucleotide excision repair
105667401 (hay)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105667401 (hay)
03400 DNA repair and recombination proteins [BR:
lhu03400
]
105667401 (hay)
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
105667401 (hay)
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105667401 (hay)
DNA repair and recombination proteins [BR:
lhu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105667401 (hay)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
105667401
NCBI-ProteinID:
XP_012214609
LinkDB
All DBs
Position
5:complement(26604775..26608944)
Genome browser
AA seq
794 aa
AA seq
DB search
MGPPKRFKKDNSKWKKRKDDYDEYHDDDSMDSNEADGVPDAAKNDVEKQDENALEDEFGA
KDYRSQMILKPDCASRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKL
TAYSLYAAVSVGLQTQDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFIE
SPFPEVLQKLLKDPVIQECRLRKIVENTEVDDIVTNIQTKIKVPQFGSKATTNTAASSKT
NSEPEPEQIVAETATVPEDITAFYDKIDKEDEDEEEEQELKTVSFEVNQEKIEVIQKRCI
ELEHPLLAEYDFRNDTINPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAG
KSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGI
LITTYSMITHTQKRSWEAEQTMKWLQDQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLG
LTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLAC
KMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTS
QNERIQILQNFKFNMKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILR
AKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPDLSYV
SREEQGQLLQQVLTANDTDADEERIPGDGLRPIVRKAGNMTSMSGADDAVYYEYKKAASS
STANKHPLFKKFRT
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaccaaagcgctttaaaaaggacaacagtaaatggaaaaagcgcaaggacgat
tacgatgaatatcacgatgatgattcgatggatagtaatgaagcagatggtgtacctgat
gcggcaaagaatgatgtggaaaagcaagatgaaaatgcgcttgaggatgaatttggggca
aaggactatcgctcgcaaatgattctaaagccagattgtgcatccagaccattatgggtg
gcaccaaatggacatatctttttggaatctttttctcctgtgtataaacatgctcatgat
tttttaattgctatatcagagcctgtatgcaggccagaacatattcatgagtataagctg
actgcgtattcgctctatgctgcagttagtgttggcctacaaacgcaagatataatagaa
tatttaaagaggttaagtaagaccagtattcctgatggtataattgagtttataaaattg
tgcacattgtcttatggaaaagttaaacttgtcttaaaacataataaatatttcattgaa
tcgccatttcctgaagtgttacaaaaattactaaaggatccagtaattcaagaatgtcgg
ttgaggaagattgtagagaatacagaagttgatgacattgtcacgaatatccaaaccaaa
ataaaagttccacagtttgggtcaaaggcaaccacaaacactgctgcatctagtaaaaca
aattcagaacccgaacctgagcaaatagtagcagaaacagctaccgttccagaagatata
actgccttttatgacaaaattgacaaagaggacgaagacgaagaagaagagcaagaatta
aaaacagttagtttcgaggtgaatcaggaaaaaattgaagttatacagaagcgatgtatc
gagctggagcatcctttattggcggaatacgattttcgcaatgatactataaacccagac
ataaatatcgatctaaagccatcagccgtcttaagaccttatcaggaaaaaagtttgcgg
aagatgtttggcaatggacgagctagatccggagtgatagtcttaccttgcggtgctggt
aaaagtttggtcggtgtaacagcttgctgtaccgtacgtaaacgcgccctggtactttgc
aactccggtgtatctgtagaacagtggaagcagcagtttaaaatgtggtccactgccgac
gattccatgatttgtcgatttaccagcgaagcgaaggacaaacccatgggttgcgggata
ttgataaccacatattccatgatcactcacactcagaaacgttcttgggaagctgagcaa
acgatgaaatggcttcaagatcaggagtggggtattatggttttggacgaggtacacact
attccggcaaaaatgttccgtagagtattaacgattgttcagtctcactgtaagttggga
ttgacagcgacgctcttgcgagaagacgacaagatcgccgatctgaactttttaattggt
cctaaattatacgaggctaattggttagaattacagaagagaggatttattgcaagagtt
cagtgcgcggaagtctggtgcccaatgacgccggaattttacagagaatatcttgcctgc
aaaatgagcaaaaaactgttattatacgtgatgaatccaaacaaatttcgttgctgccaa
tatttgattcgatatcacgaaagacgtggcgacaaaacaattgtcttctcagacaatgtg
tttgcattgaagcactacgctattaaaatgaacaagccgtatatttatgggcctactagt
cagaacgaaagaatacaaattctgcaaaatttcaaatttaatatgaaagtgaatacgata
tttgtgagcaaagtagcggatacttcgtttgatttgccagaggcaaatgtcttgattcaa
atttcatcccatggtggatctagaaggcaagaagcacaacgattgggacgtattcttaga
gctaaaaaaggagcaatcgcggaagagtataacgcattcttttacacactcgtgtcgcaa
gatacaatggaaatgaattattcgaggaagcgtcaacggtttctcgtgaatcaaggatat
gcatataaagttatcacaaaactcgctggcatggatgaggagccggatttgagttatgta
agccgagaagagcaaggtcagttgttgcaacaagttttaacggccaatgacacagatgca
gatgaagagaggattcctggcgatggactaagaccgattgtgcgtaaagctggcaatatg
acatcaatgtcgggagcggatgatgctgtctactacgaatacaagaaagctgctagctca
tcgacagcaaataaacatcctctctttaaaaaatttaggacataa
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