Linepithema humile (Argentine ant): 105668413
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Entry
105668413 CDS
T04898
Symbol
Naam
Name
(RefSeq) uncharacterized protein Naam
KO
K03679
exosome complex component RRP4
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105668413 (Naam)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105668413 (Naam)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105668413 (Naam)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105668413 (Naam)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
ECR1_N
EF-hand_1
KH_6
EF-hand_5
EF-hand_7
EF-hand_6
EF-hand_8
ECR1_N_2
EH
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
105668413
NCBI-ProteinID:
XP_067215393
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Position
7:9473602..9478054
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AA seq
618 aa
AA seq
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MTEYPSINVRLAVNRVDFNLITNEGIQPRLYTPGEEISSQPDFLRGHGTYVDEGKTLRAS
VAGVLEKVNKLISIRPLKARYNGEIGDLIVGRITEVQQKRWKVDINSKLDAVLLLSSVNL
PGGELRRRSAEDEQTMRRYLQEGDLICAEVQSIFADGSLSLHTRVLKYGKLSQGIMLKVP
PMLIQRKKTHYHNLDNGVTLILGNNGYVWIGANIQNVDKSEGGFTEDLSKIPVENRNVCA
RLRNCISILAQCNMLLSDTSVTYAYEESAKYEVHELLQPEPMLRNMDACFTAFDKDGDGF
LSISEFDLICRALFRNDRGKIYGFEEDQLREVYSIFDLKHDGTIDKEEFEFCWNRWIKIC
TRPKSAFLIVDVQNDFITGSLNITQCAAQHDGSEVIEPINRLLETIPFDAGVFYSLDWHP
VDHVSFIDNLHLREVDISSSISKEAARVYDTVTFRGPPTLKQRLWPRHCVQDSWGAELHK
DLKIVDNAIKIYKGTNPEVDSYSVFWDNKKLTQTTLSSQLQAKGVTDIYICGLAYDVCVG
ATAVDALTSGYRTILIDDCSRGVDLVDIEKTKATVIASNGVIVNSSQVKAMVEGRDRRPE
LGYKLALEIKHKLNLDDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatatccatctattaatgttcgattagcagtaaatagggtagattttaacttg
ataacgaacgaaggcatccagccgcggctttatactcctggagaggaaatatccagtcaa
ccagactttttgagaggtcatggaacttacgttgatgagggaaaaacactacgtgcgtca
gtcgccggagtcctagaaaaagtgaacaaactcatatcaattagacctttgaaagcgcga
tacaatggtgaaattggagatcttattgtgggaaggataacagaggtacaacaaaaacgt
tggaaggttgatataaattccaagcttgatgctgttttgctattgtccagtgttaattta
cctggtggtgaattgagaagaagatccgctgaagatgaacagacaatgcgtagatatctg
caggagggagacctaatttgtgctgaggtacagtcaatttttgccgatggttcactttcg
ctgcatacgcgagtgctgaaatatggcaaactctcgcaaggaataatgctaaaagtgcca
ccgatgctgatccagcgtaaaaagacgcactatcataatttagataacggcgtcactcta
atacttggtaataacggctacgtatggattggtgcaaacattcagaatgttgataaatcg
gagggtggttttacagaagatttatcaaagattccagtagaaaatcgcaacgtatgcgcg
cggttacgtaactgtatctcaattttggcacaatgtaatatgctgctatctgatacttcc
gtaacatacgcttacgaagaatctgctaagtacgaagtgcacgaattgttacaacccgaa
ccgatgctgagaaacatggacgcatgtttcactgcttttgataaggacggtgacggattc
ctgtcgatttccgaatttgatcttatatgtcgtgcattgtttcgaaatgaccgcggcaaa
atttacggctttgaagaggatcaactacgcgaggtgtactccatctttgatcttaaacat
gatggcacgatagataaggaagagttcgagttttgctggaatcgatggatcaagatatgc
acgcgtcccaaaagtgcctttttaatcgtagacgtgcaaaatgattttataacgggttcc
ttaaacataacgcaatgcgctgcgcaacatgatggttcggaagtgatcgagcctattaat
cgattgctagaaaccataccgtttgatgcaggcgtgttttattccctggactggcatccc
gtggatcacgtatccttcatcgataatttacacctcagggaagtggacatcagcagcagt
atttcaaaagaagctgcacgagtatatgacacagtgacgttccgaggaccgccgacgctg
aagcaacgtctttggccacgccactgcgtacaggattcatggggcgctgaattgcataag
gatctcaagattgtcgacaacgcgataaagatttacaagggtacgaatccagaggtggac
tcgtactcggtattctgggataacaagaagttgacccaaacgacgttgtcgtcacagctg
caggctaaaggcgtcaccgatatctacatctgcgggctggcttacgacgtttgcgtgggt
gctaccgcggtagatgcgctcactagcggatatcgcactatcctgatcgatgattgtagc
cgcggcgtcgatctcgttgatattgagaagaccaaggctaccgtgatagccagcaatggt
gtgatagtaaactccagtcaagtgaaagcgatggtggagggacgagatcggcgaccggaa
cttggctataaactcgcactggagatcaaacataaattgaatctcgatgatgaataa
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