Linepithema humile (Argentine ant): 105668860
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Entry
105668860 CDS
T04898
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03013
Nucleocytoplasmic transport
lhu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105668860 (Upf2)
03015 mRNA surveillance pathway
105668860 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105668860 (Upf2)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105668860 (Upf2)
mRNA cycle factors
P-body specific factors
105668860 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
105668860
NCBI-ProteinID:
XP_012216913
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All DBs
Position
2:complement(22968992..22973850)
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AA seq
1157 aa
AA seq
DB search
MSEITNEPATSEKEAVAEDPNAVSEEDRQYLTEYVRETEQRLATKEEIRAANLNPTRPPD
ASFSKLDSSLKRNTTFVKKLRTFGVTQLDTVLKDMANLNLTKYVSEVATALVDAKIKMTD
IAPAIRVCSFLHQTYAEFSTHFFENWQRTLSLKIGDKIANPSKLRVDLRFYAELVNAGIF
THKQGLPLLGSILTVLINMDKEEHNNASIILSFCRHCGEDYAGLVPKKVRELSEKLNISI
PKSKLLSPDKQQNVKLLLREYYNSLCKHLLKEHKELQAFEKQNRKILQTRGELSSERKEK
LEALQSSYKHLLTSVQSFSDTLDEPMPELPVDTEVKTETEETLKMINEGEDSALLEDMWG
DEETRRFYELLPDLTVFLPGSYLKETPKETPKTDAPITEDALDEEIVLDELEDPEKTEEP
SEPEVEEPQVSNTSNKILLDAFLTHLPNCVNREMIDNAAVNFLINLNTKHNKKKLVKALF
GVSRIRQDLLPFYSRLAAILYQVMPEIGNDLCQMLKQDFKYHVRKKDQINIESKIKVVRY
IGELVKFKLYSKIEALYCLKVLLHDFTHHHIEMACNLLEICGRYLFCSPDSHQRTKVYLE
QMMRKKAVTALDSRYVTIIENAYYFVNPPESTGGVAKKDRPPVHEFIRKLLYQDLSKTNT
DKVLKWMRKLDWEDESLSSYAIKCLTAAYNVKYPNIRCVGSLLAGLVAHYETIGPQVVDG
VLEDIRLCMEINLPKYNQRRIAMVKYLGELYNYRMVESGDIFRTLYLLITFGVSVDHSSP
SILDPSDHLFRIRLVCTLLETCGQYFSGGSSKKKLDYFLVFFQNYFWFKYTDPVWTTESP
FPVGIDYMYRDTLTMLRPKMQLFQSYKEAQCAVEELRNTLYPTLNDPSVNDTAAEGENDM
SVILEADEEAAVTGNGSGDAKGIAELHFEESEDCSEAQSEEEWTADAERDDAMGTQENTQ
GDRSQSLSAEGGNEGVIMDVTEELNAALPAGPRRVSCPEDDDFLSALDKMVSDNIQDRMR
DSVKPQQVDISVPLHVKSTKKTYEQLQERPSDNSTVDFVLMLRKGNKQQYKNLAVPVSSE
LAMNLRNREQEQKEEKERVKRLTLNITERQEEEDYQETINQSTRPVTVNLNRERRQKYNH
PKGAPDADLIFGPKKIR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagattacaaatgaaccagcaacaagcgagaaagaagcagttgctgaagacccg
aatgccgtctctgaagaagataggcaatacttgacagagtatgtgcgggaaacagaacaa
agattggcaacaaaggaggagattcgtgcagctaatttaaatcctacaagacctccagat
gcatcattcagtaagctggattcgagcctcaagagaaacactacgtttgtgaagaaattg
agaacctttggcgtaactcaactcgacactgttctaaaggatatggcaaatttaaacctg
acaaaatatgtaagcgaagttgctacagctctggtagatgccaaaataaagatgaccgat
attgcgcctgccattagagtatgtagtttccttcatcaaacatatgccgaattttccact
catttcttcgaaaactggcaaagaacattgtcattaaagattggtgacaagattgctaat
cctagcaaattaagagtggatcttcgattctatgcggaacttgttaatgctggaatattt
acacacaaacaaggtttgccattattgggatcaatattaactgtattgattaatatggac
aaagaggagcacaataatgctagcataatactgagtttttgtcggcattgtggcgaggat
tatgcaggtcttgtgcctaaaaaagtacgtgaattatctgagaaactaaatatttcaatt
cctaaaagtaaactattgtcaccggacaagcaacaaaatgtcaaattactgctgcgagaa
tactataactctctatgcaagcacttgctgaaggagcataaagaattacaagcctttgag
aagcagaatcgcaagatattgcagactagaggcgaattgagttcagagagaaaggaaaaa
ttggaagcactccaatcatcttacaagcatttgctaactagtgtgcaaagcttctctgac
acattggatgagccaatgcctgaacttcccgtggataccgaagtaaagacagagacggaa
gaaacgttgaaaatgattaacgaaggagaggacagtgctctgttggaggatatgtgggga
gacgaagagacgagacgcttctatgagctactaccagatctaactgtctttcttccaggc
tcatacttgaaggaaactccgaaggaaacaccaaagacggatgcaccgataacggaagac
gctctcgacgaggaaatagtcttagacgaattggaagatcctgaaaagacagaagaacca
tcggaaccggaagtggaggagccgcaggtgtctaacaccagcaacaaaatattgctagac
gccttcttgacgcacttgccaaactgcgtgaatcgcgagatgattgataatgccgcagta
aattttctgataaatctcaatacgaaacacaacaaaaagaagctggtgaaggcacttttc
ggcgtttccagaatccggcaggatttgctacctttttattctcgtttggcagctatcctc
tatcaagtaatgcctgaaatcggcaatgacctgtgtcaaatgttgaagcaggattttaaa
tatcacgtgcggaagaaggatcagattaacattgagtcgaagatcaaggtagttcgctac
attggcgaacttgtcaaattcaagctctactccaagatagaagcgctctattgcttgaag
gtattactgcatgattttacgcaccatcacattgaaatggcttgtaatttgctggaaatt
tgcggccgatatctattctgttcgccggattctcatcagagaaccaaggtctatttggag
cagatgatgcgtaaaaaagcggtcacggcactcgattcacgctatgtcacaatcatcgag
aacgcttactatttcgtgaatccgcccgaatcgaccggcggcgtcgcaaagaaggacaga
ccgcctgtgcacgaatttataaggaaattactgtatcaggatctttcgaaaacaaataca
gacaaagtgctcaaatggatgcgtaaacttgattgggaggacgaaagcttgtcatcctac
gccataaaatgcctcactgccgcttataacgttaagtatcctaacattcgctgcgtaggt
agcttgctggccggcctagtggctcattacgagaccattggtccccaagtggtcgacggt
gtgctcgaggacataagattgtgcatggagattaatctgcccaagtacaaccaacgacgt
atcgccatggtgaaatacttgggtgaactgtacaactatcgaatggtggagagcggcgac
atctttcgcaccttgtatcttctgattacctttggcgtcagcgtggaccactcatctccg
agtatactcgatccgtctgatcatcttttccgtattcgactagtgtgcacgctattggaa
acttgtggccagtacttcagcggcggctccagcaagaagaagctcgattactttcttgta
ttctttcagaattatttctggttcaagtatacggatccggtatggacaaccgagagtcca
ttcccagtcggaatagattatatgtatcgcgacacgttaacgatgctacgaccaaaaatg
caattgttccagagctacaaggaggcgcagtgcgccgtagaagaattgcggaacactctt
tatccgaccttaaacgatccttccgttaacgatactgctgcagaaggcgaaaatgatatg
agcgttattttggaggccgacgaggaagcggcggtgaccgggaacggtagcggagacgcg
aagggcatagccgagttgcatttcgaagagtccgaggattgttcagaggcgcaatcggag
gaggaatggacggccgatgcggaacgggacgacgccatgggcacgcaagagaacactcaa
ggcgatcggtctcagagcctatcggcggaaggtggtaacgaaggcgtgatcatggacgtg
acagaggagctgaacgcggctttgccagctggaccgcgacgcgtaagctgtccagaagat
gacgactttttatcagcattggacaaaatggtgtctgacaacatacaggatcgtatgcgg
gattccgtgaagccacaacaagtggacatctctgtaccgctgcacgtgaagagcaccaaa
aaaacatacgagcaattgcaggagagaccgagcgacaacagtacagtggactttgtatta
atgttgagaaagggtaataaacagcaatacaagaacctggcggtgcccgtgtcttctgaa
ctagccatgaatcttagaaatcgcgagcaagagcaaaaagaggaaaaagaacgcgttaag
agactgaccttaaatattaccgagagacaggaggaagaagattatcaagaaactataaat
cagagcacgagaccagtcacggtaaatctgaacagagaacggcggcaaaagtataatcat
ccgaaaggagcaccagatgctgatctcatttttggaccgaagaaaattcgataa
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