Linepithema humile (Argentine ant): 105670045
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Entry
105670045 CDS
T04898
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
lhu
Linepithema humile (Argentine ant)
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105670045
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105670045
Spliceosome [BR:
lhu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105670045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
Ank_2
AAA_19
Ank
nSTAND3
HA2_N
Ank_4
AAA_22
PhoH
UvrA_inter
ATPase
Ank_5
AAA_7
NPHP3_N
AAA_14
AAA_11
SRP54
ABC_tran
NB-ARC
Motif
Other DBs
NCBI-GeneID:
105670045
NCBI-ProteinID:
XP_012218767
LinkDB
All DBs
Position
7:complement(18082831..18088255)
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AA seq
1153 aa
AA seq
DB search
MPRRRQQRHHPIGEDTRIAVNLTLKKLLDTPDQKELEFPSSYTAEERAYIHELARELGLK
SKSRGKGTNRFLTVYKREGSTIVQADAVIKLQKISKQSIYNLMQSFPLNHKECQDLLPPI
ERERPLSNDVNTNTKAMGRLNNSIPQVPQLKTNFDVLHFRKSLPIFNTREEVLNALSNHQ
VVIIAGETGCGKTTQIPQYILEHYQQKHQACRIICTQPRRLSAVSVAERVAFERDEKIGQ
TFGYQIRLESRVAPKTLLTYCTNGVLLRTLMGGDSALTTLTHIIVDEVHERDRFCDFLLI
ALKDALVKYRSLKLILMSATMDTTIFTKYFNKCTVINVPGRSYDVDVYFLEDILKMTGYM
TKEMHAKKKEFSKWTDKQKTLESWKQYKPQHSNRSTKSEKSLLPAPILAQQNDPIPEKVK
LEAWLIEEMDRSVFDAWVNGREDNFAQLLHFILSENVSVDYQHSETSITPLMAAAVRGCI
NTTEQLLNLGANLNLRSANDWTALDWAKSRNHTECAELIEAYMKTYDCTVPNNDLTHVAG
TSLSEEDKMLLDIYHHTFNDDNIDYNLLLELIFYIHLKMPAGSILIFLPGYDDIVMMREK
INADEKKMNQGLRYNLYVLHSNMQTCDQKKVFKPSPQGTRKIILSTNIAETSITIDDVVY
VIDSGKVKEKSFDALSGVCTLNSNWISQACAKQRKGRAGRCRRGICYRLFSSIRFNNMQS
YQTPEILRLPLQELCLFTKHLTPGNTPIAEFLDKALEPPSNVVTRNAVQLLKTIDALDPW
EDLTELGSHLLDLPIEPRLGKMLLYAVVLKCLDPILTIVCSLAYKDPFILPSQPSQKRAL
TAARKKFATGTYSDHMVVLRAFQGWQNARATGKERAFCEKNFISAPVMEMVVGMRTQLLG
QLRASGFVRARSPGDIRDLNSNSENWAVVKAALTAGLYPNLIRVDREHMQLRTQKEVKVF
FHPSSTLRDYPKSPRVTSAQTHAANVQSLPCDWLLYEEMSRTGRFCHVKVVTLVNPLTVA
LFSGPARLPMDVIYEAEAVPESESDSEVDESHEGTIFKLDDWVVFKLDPETAQLFLHLRQ
KWNALFLRRMKAPNKAMSALDEKVISTLVSVITNEEQACGLQQPSGIGQRPRPLIVDYYP
ANVRRDDYPERYF
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgccacgtagaagacagcaaaggcatcaccccataggggaagacaccaggattgcagtt
aacctgactctaaaaaaattattggacactccagatcaaaaagaactagaatttccatca
tcgtacacagcagaagagagagcatatatccatgaactagctagagaacttggtctgaaa
tcaaaaagtcgaggaaaaggcacaaatcgatttttgacagtatataagagggaaggttca
actatagtccaagccgatgctgtgataaaattacaaaaaatctcaaaacagagcatatat
aatttgatgcagagttttccattaaatcacaaggaatgtcaagatttacttcctccaatt
gagagagaacgtcctcttagtaatgatgtaaatacaaacactaaagcaatgggcagattg
aacaacagtataccgcaagtacctcagttgaagacaaattttgatgtgctgcattttcgg
aaatctctgccaatttttaacactagagaagaagttcttaacgcattgagcaatcatcaa
gtggtcataattgcgggtgaaacaggatgtggcaaaactacacaaataccacaatacata
ttggagcattatcagcagaagcatcaagcttgcaggattatttgtacacaacccaggcgc
ttatcggctgtatctgtggcggaaagagtagcattcgagagggacgagaagatcggccag
accttcggatatcaaattagattggaaagcagagtagctccgaaaactctcctgacatat
tgcacaaatggagtattacttcgaactttaatgggcggtgattctgctttgaccacgctc
acgcacattatcgtcgatgaagttcacgagcgggacagattctgtgactttcttctgata
gctttaaaggacgcgttggttaaataccgttccttgaaattgatactcatgagtgcaacg
atggatactaccatcttcacaaaatatttcaacaaatgcacggtcatcaatgttcctgga
cgatcatatgacgtggacgtgtacttcctggaggatatattgaagatgactggttacatg
acgaaggaaatgcacgcgaagaaaaaggagttttctaagtggacggacaagcaaaagact
ctggagtcctggaagcagtacaagccgcagcattctaataggagcaccaagagcgagaag
agtctgctgcccgctccgattctagctcaacagaacgatcctataccggagaaagttaag
ctggaagcctggctgatcgaagaaatggacaggagcgtcttcgacgcgtgggtgaatggt
agagaagataattttgcgcagctcttacattttatactgtctgaaaatgtctccgtggat
tatcagcattccgaaacctctataacaccgttgatggctgccgcggttagaggctgcata
aacacgactgagcaacttctgaatttgggcgcaaatctcaatttacgatccgctaacgat
tggaccgcattggactgggcgaagagcaggaatcacactgaatgcgccgagctaatcgaa
gcgtacatgaaaacttacgattgcacggtgccaaataatgatctgacgcatgtcgccggc
acgtcgctctccgaagaagacaaaatgctgcttgacatttaccatcatacattcaatgac
gataatatcgattacaatctgttgctggaattgatcttttacattcatctgaagatgcct
gctggctctattttaatatttctgccgggatacgacgatatagtcatgatgcgggagaaa
ataaacgcggacgagaagaagatgaatcaaggtctacgctacaatttgtacgtccttcac
tcgaacatgcagacctgcgatcagaagaaggtgttcaaacccagcccacagggcacgcgc
aaaatcatcctgtctacgaatatagcggaaactagcattacaatcgacgatgtcgtgtac
gtcatcgactcgggcaaggttaaagagaagtctttcgacgctttatcgggcgtgtgcaca
ctaaactccaattggatatctcaggcttgcgcaaaacagcggaaaggcagagcgggcaga
tgtagaagaggcatctgttaccgcctgttctcttcaattcgatttaacaacatgcaatcc
tatcaaacgccggagatcctgcgattaccgttgcaagaattatgcttgtttacgaaacat
ttaacgcccggcaacacgcctatagccgaatttttggataaagctctggaaccgccgtct
aatgtggtcactagaaatgcagttcagttattgaagacaatcgacgccctggatccttgg
gaagatctaacggaattgggaagtcatttgttagatttgccgattgaaccgagactcgga
aagatgttgctatacgccgtcgttctgaaatgcttggatcccattttaacgattgtttgc
agcttagcatacaaggacccctttatattaccgtcacaaccgtcgcaaaagagagcattg
accgcagcacgtaaaaaattcgccaccggaacgtactcggatcatatggtggtcctgcgg
gcgtttcagggttggcaaaacgctagagcgactggcaaggaacgtgccttctgcgagaaa
aatttcatttccgctcccgtgatggagatggtggttggaatgcgcacacagctcctagga
cagttgcgtgcgtctggattcgttagagccagaagtcccggggacattcgggatctgaat
tctaattcggaaaattgggctgtggtgaaagcagccctgaccgcaggcttgtatcccaac
ttgatccgagtcgatcgagagcatatgcagctacggacgcaaaaggaagtcaaggtgttc
ttccatccctcgtcgaccttaagagattatccgaagtctccgagagtgacatccgcgcag
acgcatgcagcaaacgtgcaatctttaccgtgcgattggttactttatgaagaaatgagt
cgcaccggacgtttctgtcacgtgaaagtcgtcacgcttgttaatccactaactgtcgcg
ctatttagtggaccagctagattaccgatggatgtaatttacgaagctgaagctgtaccg
gaaagcgaatcagactcagaagttgacgagtctcacgaagggacaatctttaagctcgat
gattgggtggtatttaagttggatccggaaacggctcaattattcttgcatttgcggcag
aagtggaatgctttgttcctcagacgtatgaaagcaccgaacaaggctatgtcagcatta
gatgagaaggtcattagcactttggtgtctgtgatcacgaacgaagaacaagcatgcggc
ctccagcaaccctcaggcattggtcaacgaccacgtccattaatcgttgattactatccc
gcaaatgttagaagagacgattatccggaaagatatttctaa
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