Linepithema humile (Argentine ant): 105670161
Help
Entry
105670161 CDS
T04898
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105670161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105670161
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105670161
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105670161
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105670161
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
HEAT_MROH2B_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105670161
NCBI-ProteinID:
XP_012218940
LinkDB
All DBs
Position
1:28705830..28718091
Genome browser
AA seq
1863 aa
AA seq
DB search
MTSTKSKEVADEYISSLSDLSFNSKPLINMLTMLAEDNIEHAPAIVQAVETHLQKVRSDI
KLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPPK
KLFSLDVRVQSIDPAWPVTAPSASISSGSIHVNPRFLSMPQQQAATSIVQPIVPSVKLPP
GEPATTTEAAMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKTEVV
IPTAHIPPTTEAAAQGKPIAPVVPNQTPQQVAKQFPAAAASLLKNAGANSGPRIAPASSI
AVASAKPVSRDPRLKPTPAVQEVAVPTVDPRQRAGTTSPKEQRNEGQTQPVANIIVTSNL
LKQQLISKPAVTSTINKPPANPAGSDNPTLLNVINNNNHTDTNLNNNNKNFSGNTNKDAV
SHRTKKDPRFSVLSTENNRGSGSGESNKSKESKSSNSRGSSSSSTFDKSSTSSKSSHRKV
GIKSRSKQPSMCPSKIPKVDRDSSPVRSKSREKDSEDSSPSSRTSPQSSFQASKNRKKNT
KSRKRSPSPPYRIPRRNDTKSSSSLSSSGGVTEEEQSGSLIVSPPHPPAFKEIRSNARQR
NYVRRNKDDSLSPERSPASAGNAQIAAEPTLESSSKDEDLRAPLSLPGTTISVPEKKEDL
DLRVLPSVNTNKRRSDEHTEGTPSKKTKAEKFDALFGNEDVDLRTLTHPKAGRPPTPPPP
VISGEDGKDSWAKLKTPTKNDRDKQINNADEKRERDRNRDRLGRLRLYNKLPDDPKERRR
TLSNEEQDVRPGRRGRENDKPERNDDRNIEIIMKQAAEQLNQGSITKTQYNTLIQEVLHM
SEDRKLRAAQRKEKEGTIIWEKGINMDMSGAADRVASFSPSNDKEVIRNKEHPIPRNPNG
PRWNQPWQQPWAHPPGPYGPQGHFNSDMRSVAPWQNPRHFGPMRPDYQYHGAFNHNMGPN
PRLGPGMMGPMGPNGPIMSNLLPNGPMGPMGPMANPSMAMGCHPAMMMNNGPMTNLMTNP
NIPPLVSGRNASPNTSAKYDLEDSDQSYGNVVKNAGSHNRELPPPDSKLLTEIARDTMKS
INIDNIPREIRYYGQTGVVFMNWDDPREIGFQDGVRRILIDEKDTITCAFNDQYKEFIYE
GEVHRIKLGAPTRELYIDDRWYECYFGGMPITIELGGKKISVKLEGPPPQVKIGTVKRID
LVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFTDALQTVLLNGRPFKVEFGGLP
KPIVVRDKKHFIRFSVLPRGVRAGHVKISGMRGEDPVESPPTTPVIAQKPKVDAAATPSQ
APVVEHESTSQDGSDFTSTSKPDLQLDMLSSVLPSAMAPSSGLSYQAEPAENPPAPAPVL
PLNMNELFQRLVETGIVPSLTEQKKQEEEEKKEPEIIPVCFDKPETLKVKQPAIATALYS
GMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDSARKAHSRPWYYDVSDWIQFEEIED
LEDRAQSWFETEKQTAETEGVVADDTPQETLQPSVPTGSDEDSRCQVCHDAFEQFYNEEK
EEWHLRPAINYEGKNYHPLCLEDYKRALEKSALTLEETVAEIEEGKIEGSEEAAGVESKQ
EESNVEVLKKESESTENTEQVEENSIEPTTSENKEESSNVDNSEVVQNDAEEKEKVESVN
EENAASDDVEKDASAINEEKKSPDENVIMPFENIKIKEEPLDYVSEEPDSEMFVFSNLAI
KEEPIESEPDPEEIVNEQAMVDTTHAAMKSSIDGNVELDSAPSAIPAAPSRIKINITKPL
SSNKELSEENKEKEKVAIETPVEENAEQPLVPASIKPSLQGRKLSNLPPVEKGQELSGLC
SIM
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaagtctaaagaagttgccgatgagtacatctcatctctatctgatcta
tcgttcaacagtaagccgcttattaacatgctcaccatgctggcagaagataacattgaa
catgcaccagcgatagtgcaagctgtcgaaactcatctacaaaaggtgagaagcgatatc
aagttgccagtactctatctcatcgactcgattgtcaagaatgtgaatggagactatttg
aatctctttacgcaaaatatagtgaatacattttgtggagtgtttgagaaggtcgatgag
aacacaagagccagcatgtggaagctacggcaaacgtggaatgacgtatttccaccaaag
aaattgttttcattagatgtgcgagtacaaagtatcgatcccgcatggccagtcactgcc
ccttctgctagtatttcttcaggttctatacacgtaaacccgcgatttctttcaatgcct
caacaacaagctgcaacgtcaattgtgcagccaatagtgccgtctgtcaaattaccaccg
ggagaaccggcaacaacaacagaagcagctatgcgagagcaactgttgaaaaagcaacgg
gaattattagaattgcaaaagaagaagattgaactggaactgttgcaagcgaaagcaagt
ttagagcaacaacagagacaactcgacaaacaagctggtagcttgaagacagaagtggtt
atacctactgctcacatcccgccaaccacggaggcagcagcgcaaggaaaacccatagca
cctgtggtaccaaatcaaacgccgcaacaagtagcaaaacagtttcctgcggcagctgcg
tcgcttttaaagaatgcaggagcaaacagcggtccacgaattgcaccagctagtagtata
gcggtagcgtcggctaaaccagtctcgcgagatccacgtttgaaacccactcctgctgtt
caggaagtggcagtaccaacagtagatccacgacagcgagcgggtacgactagtccaaaa
gaacagcggaatgaaggccaaacgcagcctgtcgcaaatatcattgtaacttcaaaccta
ttaaaacagcagttaatttcgaaaccggctgtaactagcactatcaacaagcctccggca
aatcctgccggttccgataatccaacgttattaaacgttattaataataacaatcatact
gatacgaatctcaacaataataataaaaatttcagtggtaacacaaataaagatgctgtc
tcgcatcgaacaaagaaagaccctcgattttcagtattgtcaaccgagaacaatcgagga
agtggaagcggtgagtccaacaagtcgaaagaatcgaagagctcaaactcacgcggctct
tcctcgtcttcgacgttcgataagtcttccacttcctccaagtcctcgcataggaaagta
ggcattaagtcgcgatctaaacagccttcgatgtgtccaagtaagattccgaaagtcgac
agagactcgagtccggttaggtcaaaatctcgcgagaaagacagcgaagatagttcaccg
tcctcacgtacctctccacagtcctccttccaagcctctaaaaaccgtaagaagaacaca
aaatcgagaaaacgtagtccaagtcccccgtatagaattcccaggcgtaacgatacgaaa
tcgagttcaagtttgagcagttctggtggtgttactgaggaggagcaatctggttcgctg
atagtatctcctcctcatccaccggcattcaaagagatcagatcaaacgctagacagaga
aattatgtaagacgaaataaagacgacagtcttagtcctgaacgttctccagccagtgct
ggaaatgctcaaatcgctgctgaaccgacattggaatcctctagcaaagacgaagatctc
agggcaccgctgtctctaccaggcaccactatttccgtacctgaaaagaaagaggattta
gatctacgagtattaccatctgttaacactaataagagacgcagtgatgagcacacagaa
ggaaccccgtctaagaaaactaaggctgagaagtttgatgcattatttggtaatgaagat
gtagatttgcgcactctgacacatcctaaagccggtcgacctccgacacctccgccgcct
gtgatttccggagaagatggaaaagatagctgggcgaagttaaagacgccaacaaagaat
gatagagataagcaaattaacaatgccgacgaaaagcgcgagagggaccgtaatagagac
aggctgggtcgtctcagactttataacaagcttccggacgatcctaaagaaagaagaaga
acattgtcgaacgaggagcaagacgtcagaccgggacgcagaggtcgggaaaatgacaag
cctgagagaaatgacgatagaaatatcgagataataatgaaacaagctgccgagcaattg
aatcaaggctcgattacgaaaacacagtacaacaccttgatacaagaagtgttgcatatg
agtgaggatcggaaattacgtgccgcacagcgcaaggagaaagagggtactataatatgg
gagaaaggtattaacatggacatgtccggtgctgcggatcgcgtcgcgtcgttcagtccg
tctaacgataaggaagtgataaggaataaggaacatccgataccgcgaaacccgaacggg
ccgcgatggaatcaaccgtggcaacagccttgggcgcatccgccggggccgtacgggccg
cagggccactttaattcggacatgagatctgtcgcaccttggcagaatccgagacacttc
ggaccgatgaggccggattaccaatatcacggcgccttcaatcacaacatggggcctaat
ccgcgcttagggcccggcatgatgggtccgatgggccccaacggaccgatcatgtcgaat
cttctgccgaacggcccgatgggaccgatgggacccatggcgaacccttccatggcaatg
ggatgtcatcccgcgatgatgatgaataacggaccgatgacgaatctcatgaccaatccg
aatataccgcccttggtgtccggtaggaacgcgtcaccgaacacatctgccaaatacgat
ctcgaagacagtgaccagagttacggcaacgtggtgaagaacgcgggatcgcataatcgc
gaattgccgccgccggattcgaagttgctcaccgagatagcgagagacaccatgaagtcc
ataaatatcgataatataccgcgagaaattcggtactacggacagacgggtgtggtcttt
atgaattgggatgatccgcgggaaattggtttccaggacggcgtgagaagaatactaatc
gatgagaaagatactataacttgcgcatttaacgatcagtataaggagtttatatacgag
ggagaagtacacagaatcaaactaggtgcgcctactcgagaattgtacatcgacgatcgc
tggtacgagtgttatttcggtggtatgccaataacgatcgagcttggcggcaaaaaaatt
agtgtgaaattggaaggaccaccgccgcaagttaaaatcggcactgtaaagagaatagat
cttgtggtcgcaaaaatcaatctcatcattaacgcgcgaaatatggtgccagtatttttg
gacgcaaaaccacaaatattcgaaatcgaagggaaaccccatacactggaattcacagac
gcgttacagacagttcttctaaatggacgaccgtttaaagtcgaattcggcggattgccc
aaacctatcgttgtcagagacaaaaagcattttattagattttcagttctgccaagaggt
gtgcgtgctggtcatgttaaaattagtgggatgagaggcgaagatcctgtcgaatcacca
ccaacaacacctgtgattgctcaaaaaccgaaggtggacgctgcagctacaccaagtcag
gcaccggttgtagaacacgaatctacatcgcaagatggctcggacttcacttccacctcc
aaaccagacttgcaattggatatgttgtcgtcagttctaccatcggcaatggcaccatcg
tctggtttgtcatatcaagccgaacccgcggagaatccacccgcaccggcgccagtattg
ccattgaatatgaacgaattgttccaaagactggtcgaaactggtattgttccaagcctt
acggaacaaaagaagcaagaagaagaagagaagaaagaaccagagattattcctgtctgc
ttcgataagccagagactcttaaagttaagcaaccagccattgccacggcattatatagc
ggtatgcagtgcagttcttgtggagccagatttgcacctgagctagccactcgatacagc
catcatttagattggcatttcaggcagaacaggcgtgaacgagactctgcgagaaaagcg
cactctcgaccttggtattatgatgtcagtgattggatacaattcgaggaaattgaagat
ttagaagatagagcgcaaagttggtttgagactgaaaaacagacggcggagacggaaggt
gtggttgccgacgatacacctcaggaaacgttacagcctagcgtgccgactggcagcgat
gaagattcgagatgtcaagtttgtcatgacgcatttgaacaattttacaatgaggaaaaa
gaggaatggcatttgagaccggcgattaattacgagggaaagaattatcatccactctgt
ctggaagattacaagagagcgttggaaaagtcggccttgacacttgaggagacagttgca
gaaattgaggaaggtaaaatagaaggttccgaagaagcggccggagttgagtctaaacaa
gaagaatccaatgtagaagtgttgaaaaaggaatctgaatctacagaaaatacggaacaa
gtggaggaaaattctatagaacccactacatcagaaaataaagaagaatcttctaatgtg
gataattccgaagtcgtgcaaaatgatgcagaggagaaagaaaaggtagaaagtgttaat
gaagaaaatgcagcttcggacgacgtcgagaaagacgcgtctgcgataaatgaggaaaag
aaatcgccggatgaaaatgtaatcatgccattcgaaaacattaagattaaagaggaacca
ttggattacgttagcgaagagcccgacagtgaaatgttcgtgttttccaatttggcaatt
aaagaggagcctatagaatccgaacctgatcccgaagaaattgtaaacgagcaggctatg
gttgatacgacgcacgctgcaatgaaaagttccatcgacggaaatgtggaattggactcg
gcaccgtcagctattcccgcggctccgtcgcgaattaagatcaatatcactaaaccgttg
agttctaacaaagagttgtctgaagagaataaagaaaaggaaaaggtagcgattgaaacg
cccgtagaggaaaacgcggaacagccattagtaccagcttccattaaaccgagtttacag
ggtaggaagctatcgaatttacctcctgtggagaaaggacaagagttgtcaggactctgc
tccatcatgtaa
DBGET
integrated database retrieval system
