Linepithema humile (Argentine ant): 105671133
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Entry
105671133 CDS
T04898
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105671133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lhu04121
]
105671133
Enzymes [BR:
lhu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105671133
Ubiquitin system [BR:
lhu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105671133
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105671133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EIPR1
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
EIF3I
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_DCAF4
zf-C3HC4
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
zf-RING_2
Beta-prop_DCAF12
WD40_like
zf-RING_UBOX
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_5
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT140_1st
zf-C3HC4_4
zf-RING_10
WDR54
CREPT
RsiG
Rx_N
zf-RING_6
U-box
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
105671133
NCBI-ProteinID:
XP_012220481
LinkDB
All DBs
Position
4:complement(30625198..30629713)
Genome browser
AA seq
682 aa
AA seq
DB search
MSGSGDMGNDSSAGSSGGLGDSSGKIRKHHQSTNVLQRMTGILEDKSNDYMCPICFDLID
TAYITRCGHTFCHHCIVKCLEIKDRCPKCSFTLKEQDIFPNFLLDELVSKYKTRTKGLAQ
LGSYAENSRHRTSGNDLSIPAADGLRSIVAAESANLTLPDVNVMLEVLTQRKHLLEAETC
TAQNKLLYEFLKHLLQQKEEQMNQLQKEVALIKKDMEEVENILKDVQSKCPRAEDVKKAS
ENDNAQVSALRREMLGLIDIIDSNMVKPSDKATVGNDNLTNPSVAQSGGSTLAVRRKRLH
AHFDDFVQCYFDSRGKELLLGQKLQYQSEAQQHGGVHSTSSGLNVFRENLVKFSRYTSLR
PLATLNYSSDLFNNSTIVSSIEFDKDNEFFAIAGVTKRIKVFDYGAVIRDTVDIHYPCIE
MVSSSKISCVSWNSFHKGMLASSDYEGTVTVWDATTGQRTKAFQEHEKRCWSVDFNDVDT
RLIASGSDDARVKLWALNTDYSVASLEAKANVCCVKFNPRSSCHLAFGSADHCVHYYDLR
NMKEALCVFKGHRKAVSYVKFINKEEIVSASTDSQLKMWNINNPLCLRSFVGHVNEKNFV
GLATDGDYVACGSENNALYVYYKGLTKQLFSYKFDAVRSILELQDRREEDLNEFVSAVCW
RQMSNVVVAANSQGIIKILELY
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggttctggtgatatgggaaacgatagcagtgcagggagcagtggtggattaggc
gacagtagcggtaaaattaggaaacatcaccaatcaacaaatgttctgcagaggatgacc
ggtatattagaagataaaagcaacgattacatgtgtccaatttgttttgatctcatcgac
acggcatacatcacacgttgcggacatacgttttgccatcactgcatcgtcaagtgtcta
gagattaaggaccgatgtccaaaatgcagtttcactctgaaggaacaagacatctttcca
aactttttgttggacgaactagtctcaaaatataaaacgagaactaaaggcctcgcacag
ctaggctcttatgcagagaacagcagacatagaacgtcgggtaacgatttatcaataccg
gcagccgatggattaagaagcatcgtggcggcggaaagcgccaatctcactttacctgat
gtaaatgttatgttggaagtactgactcagcggaaacatttactggaggcagagacttgt
accgcgcaaaacaaactcctgtacgaattcctaaaacacttgctgcaacaaaaggaggag
cagatgaatcagttgcagaaggaagtggcgctaatcaagaaagacatggaggaggtggaa
aacattctaaaagacgttcagagcaagtgtccacgagcggaggacgtgaagaaagcaagc
gaaaatgataacgcgcaggtctcggctctcagaagggagatgctcggccttatagacata
atagattcgaatatggtgaaacctagcgacaaggcgaccgtcggcaacgataacttgaca
aatccgagcgttgctcagtcaggcggatcgaccctagctgtacgcaggaagaggctgcat
gctcatttcgacgatttcgttcaatgctactttgattctcgcggtaaagaattgctgctt
ggtcagaaactgcagtaccagagtgaagcgcagcagcacggcggcgtgcacagcacgagt
tccggtttgaacgtcttccgcgagaatctcgtgaaattttcaaggtacacttctctgcgt
ccgttggccactctcaactactcatcggatctcttcaacaattccactatcgtatctagt
atagaatttgacaaggataacgagttctttgcaatagccggtgtgacaaagcgaataaaa
gttttcgattatggcgccgttatacgtgacactgtggacattcattatccgtgtatcgag
atggtttcgagctctaaaatctcatgcgtttcatggaattcttttcacaagggcatgctg
gcgtcatccgattatgagggcacggtaacggtatgggatgcgacgaccggtcagaggacc
aaagcatttcaggaacacgagaaaagatgctggtccgtcgatttcaacgacgtggacact
agattgatcgcatccggctccgatgacgctcgagtaaaattgtgggcattgaacaccgat
tattctgtagcatcgttggaggcgaaggcgaacgtatgctgtgtgaaattcaatccgcgc
agctcgtgtcacctggcgtttggctctgctgatcactgtgtgcactattacgatttgcgt
aacatgaaggaggcgttgtgtgtattcaaaggacatcgtaaagccgtctcctacgttaaa
tttatcaataaagaagaaattgtgtcggcaagtacggattctcaattgaaaatgtggaac
atcaacaacccgctctgtctgcgatctttcgtaggacacgtaaatgaaaagaactttgtc
ggcctcgccactgatggcgattacgttgcttgcggttctgaaaataatgcgttatacgtc
tattataaaggactgacgaaacagttgttctcatataaatttgatgctgtgcgaagtata
ttggagttgcaagacaggagagaggaggatctgaacgagttcgtgtctgcggtatgctgg
aggcaaatgtccaacgttgtggtagctgctaattctcaaggaattattaaaatattagaa
ctttattag
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