Linepithema humile (Argentine ant): 105671657
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Entry
105671657 CDS
T04898
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105671657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105671657
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105671657
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
105671657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
105671657
NCBI-ProteinID:
XP_012221413
LinkDB
All DBs
Position
2:30857817..30860126
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AA seq
292 aa
AA seq
DB search
MAETPLSLGEKTFIFHGVDLDLRNDGRSRCQYRSLEIETRLMQHAHGSARLRIGNITDVL
VGVKLEIDTPYAEKPEEGKLDFFVDCSANATPEFEGKGGDDLATEISNILSMAYQTPSVF
DLRQLCILPNQKCWKMYVDILILQCGGNLFDAVGAAVKAALHNTEIPKVIAAMLDGGTSD
IQISDDLYDCVKLDVTNYPVIVTVCKIGDNFVIDPTLEEESCSAAGLVMSVAPNGRVTSM
VKLGCSSLLPNTLIKMLQTGKDIGLKLNEALMKGLKEEDKLGRSKPIFGFLR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaactcctttgagtttaggcgaaaagacatttatttttcacggagttgatctt
gatctcagaaatgatggtcgatctaggtgccagtatcgttcacttgagattgaaaccagg
ctgatgcagcatgcgcatggatcagccagattacgcataggcaatatcacggatgtgtta
gtcggtgtgaaactagaaatagacacaccgtatgccgaaaaaccagaggaaggcaaattg
gatttttttgtagactgctcagctaatgctacacctgagtttgaaggcaaaggcggagat
gatctggcaactgagataagcaacattctttccatggcttatcagacaccgagtgttttt
gatctgaggcagttgtgtatattaccgaatcaaaaatgttggaaaatgtacgtggacatt
ttgattcttcaatgcggtggaaatttatttgatgctgtgggcgcagctgtgaaggcggca
ctgcataacactgaaattcccaaagtgattgcagcaatgctggacggtggtacatcggat
attcagatatcggatgacctttacgactgtgtcaaactggatgtcacgaattatccggta
atagtgacagtatgcaagattggagacaacttcgtgatagatccaacgctggaagaggag
tcgtgcagtgccgctggtctcgtcatgtccgtggcgccgaacggcagggtgacctctatg
gtcaagctgggatgcagcagcttactgcccaacaccttgattaagatgttgcaaacgggg
aaggatatcggtctcaagctaaatgaagctctcatgaaaggactaaaagaggaagataag
ctcggtcgatcaaagcccatattcggctttctcagataa
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