Linepithema humile (Argentine ant): 105671997
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Entry
105671997 CDS
T04898
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105671997 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105671997 (Mtr4)
03041 Spliceosome [BR:
lhu03041
]
105671997 (Mtr4)
03009 Ribosome biogenesis [BR:
lhu03009
]
105671997 (Mtr4)
03016 Transfer RNA biogenesis [BR:
lhu03016
]
105671997 (Mtr4)
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105671997 (Mtr4)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105671997 (Mtr4)
Spliceosome [BR:
lhu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105671997 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
105671997 (Mtr4)
Ribosome biogenesis [BR:
lhu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105671997 (Mtr4)
Transfer RNA biogenesis [BR:
lhu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105671997 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Death_3
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105671997
NCBI-ProteinID:
XP_012222069
LinkDB
All DBs
Position
5:26013778..26018753
Genome browser
AA seq
1010 aa
AA seq
DB search
MATFSEDLFDVFDERGDDAEIPDIALKTIELDARLKRQHDTDDEKSIVKKLRQDPVLDDI
NLEEVACRIKVHAIDTIESCTHEVAIPPDQDYVPLERNQDKPAKEYKFILDPFQKEAILC
IDNNQSVLVSAHTSAGKTVVAEYAVACSLRDKQRVIYTTPIKALSNQKYREFYEEFKDVG
LVTGDVTINPTASVLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETL
ILLPDNVHYVFLSATIPNARQFAEWVAHLHNQPCHVISTDYRPTPLQHYIFPVGGDGIHL
VVDENGQFKEENFNRAMACLQNAGDAAKGDTKGRKGGLRGTNSGQTNIFKMVKMIMERNF
APVIIFSFSKKDCESYAMQMAKLDLNTLEEKKLVDEVFNNAVDVLNDEDKKLPQVTNLLP
LLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDG
KDFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVVGKAIVQGKPDPINSAFHLT
YNMVLNLLRVEEINPEYMLERSFFQFQNQAGIPALYNKVTELYDTYNTVNVERYDEISSY
HDIREQLDQLSERFRSFLTRPEYLLPFLQPGRLVKVKNGNETFDWGIIVNFRKKTPKNPM
KDKTVVVIDILLHVSKSSKEGNPIPCREDEEGEMEVVPVLHHLISQISSLRLYYPKDLRP
SDNRKSVLKTIREVTKRFPDGLPLLNPITDMNIGDQAFKDIVKKIETLEKKLYAHSLHKD
PNVNILYEQFLHKEELAAQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTAADVIEL
KGRVACELNGADELLMTEMIFNGLFNALNVPQMVALISCFVCDEKSNEMPKSTEELSGPL
RQMQDLARRIAKVSTEANLELDEDAYVDRFKPFLMDVIYAWCKGATFLQICKMTDIFEGS
IIRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttttagtgaagacttatttgacgtttttgatgagcgtggcgatgatgccgaa
ataccggacatcgcgttaaagacaatcgaacttgatgcgagattaaagcggcaacatgac
acggatgatgaaaaatcaattgttaaaaaattacgacaagatcctgtgctggatgacatt
aacttagaggaagtagcatgtcgtataaaagtgcatgctatagacactatagaatcttgt
acgcatgaagtcgctattcctcctgatcaagattatgttcctttggaacgtaatcaggat
aaaccagcaaaagaatataaatttatacttgatccgttccaaaaagaagcaattttatgt
atagacaacaatcaatcagttcttgtttccgcacatacatctgctggtaaaactgttgta
gccgaatatgcggtagcatgttcactcagagataaacagagagtaatatacacaactccg
attaaagcgttgagtaatcaaaaatacagagaattttatgaggaattcaaggacgttggt
ctagtaacaggcgatgttacaataaatccaacagctagtgtattaattatgaccactgaa
attttacgtaacatgctctacaggggttcagagataatgcgtgaagtcggctgggtgata
ttcgacgaaattcattacatgcgcgataaagagagaggcgtagtgtgggaagagacgctt
atattgctgccggacaatgtgcactatgtgtttctttctgctactataccaaatgcacga
caattcgcggaatgggtggcacatttgcacaatcaaccctgccatgtgatatctacagac
taccgacccaccccattgcagcattacatatttccagttggtggcgacggtattcatttg
gttgtagacgaaaatggccagtttaaagaggaaaattttaacagagccatggcgtgtctg
cagaatgcaggcgatgcggctaaaggtgacacaaaaggtcgaaaaggtggtctacgcggc
acgaatagcgggcaaacaaatatttttaaaatggtaaaaatgattatggagagaaacttc
gcgcctgtaattatcttcagtttttcaaaaaaagattgcgaatcttatgcgatgcaaatg
gctaagctggatttgaatacgttagaagagaagaaattggtggatgaggttttcaataac
gctgtggacgttctgaacgacgaggacaaaaagttaccgcaagttacaaatttgctgccg
cttttgcgacgtggaattggcattcatcacggtggactcttgccgattttgaaggagacc
gttgagatactgttcggcgaaggtcttatcaaagcacttttcgccactgaaacgttcgcg
atgggcttgaacatgccggcgcggacggttctgttcacggcaccccgtaaattcgacggt
aaagattttcgttggatcacatcgggtgaatacatccaaatgtccggtcgcgccggcaga
agaggtcttgacgacaaagggatcgtcatattgatgatagacgagcaagttagtccagtc
gttggtaaagcaattgttcaaggaaaaccggatccgatcaattccgcgtttcatctgacg
tacaacatggttcttaatcttctccgggtggaagaaattaatccggaatacatgttggaa
aggagctttttccagtttcaaaatcaagctggtattcccgctttgtacaacaaggtaacg
gaattgtacgacacttataataccgtgaatgtcgagaggtacgacgagatatcttcttat
catgacatacgcgaacaacttgatcagttgagcgaacggtttcggtcgtttttaacgcga
ccggaatatttgcttccatttttgcaacctggaagattagtgaaagtgaaaaacgggaac
gaaacgtttgattggggcatcatagtgaactttaggaagaaaaccccgaaaaatccaatg
aaagacaaaactgttgtagttattgacattttactgcacgtatcgaaaagttctaaagaa
ggcaatccaattccttgtcgcgaagatgaagaaggcgaaatggaagtggttcccgttttg
catcatttaatttctcaaatcagctcgcttagattgtattacccaaaagacctcaggccg
tctgacaatagaaagagcgtattgaaaacgatacgggaggtaacgaaaagatttccagat
ggcctgccgttgcttaatcccatcacagatatgaatataggagatcaggcctttaaagat
atcgtgaaaaaaattgaaacgttagaaaaaaaattgtacgcacattctttgcacaaggat
cccaatgtaaatatattgtatgaacaatttttacataaagaagaattagctgcacaacta
aagcaagccaaggaggaatttaagcaggctaagtcgatacttcaaatggacgaactcaaa
tgcagaaagcgagttttaaggaggatggcgtattgcacagcggcggacgttatagaactg
aaaggacgtgtagcctgcgaactgaacggtgccgacgagctactaatgacagaaatgatc
ttcaatggtctttttaacgctttaaacgtgccacagatggtggcgttgataagctgtttt
gtatgtgacgaaaaatcaaacgaaatgcctaaaagcacggaagaattaagcggcccgctc
cgacagatgcaggacttggctcgaagaatagcaaaggtttctacagaagcaaacttggaa
ttggatgaggatgcgtatgtcgatagatttaaaccatttctaatggacgttatatatgct
tggtgtaaaggcgcaacgttcttacaaatttgcaaaatgacagatatattcgaaggatct
atcatcaggtgcatgcggcgtttagaagaggtacttcgacagttatgtcaagctgcgaaa
ggtatcgggaatacagatctagagaacaaattcagcgaagcgatcaaacttataaaacgt
gatatcgtgttcgctgcgtccttatatttatga
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