Linepithema humile (Argentine ant): 105672374
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Entry
105672374 CDS
T04898
Symbol
DNAlig3
Name
(RefSeq) DNA ligase 3 isoform X3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
105672374 (DNAlig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhu03400
]
105672374 (DNAlig3)
Enzymes [BR:
lhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105672374 (DNAlig3)
DNA repair and recombination proteins [BR:
lhu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
105672374 (DNAlig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
zf-PARP
DNA_ligase_A_C
BRCT
RNA_ligase
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
105672374
NCBI-ProteinID:
XP_012222689
LinkDB
All DBs
Position
8:complement(11978754..12004486)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSSDVEEDQQEEKSFAVERAKTGRAKCKRCKCVIEKGELRIARFVASFFSDGKLTAAWHH
VNCLFDAFAKQRATTKRIDDPAEDVKGWELLSDDDKKVIFDKLKELEKSYPIKVLKKPAT
AQKAGPSGKMTEKNLDQKVKKTAAVVADDKKKDKEEKEKISSKDDSFREFRRLCSNIADV
DAYTDKTAIIKTMFTKGAQGDGFKGDIVLWCKLLLPGAVKRIYNLQSKQLIKLFARLLLQ
DEDEMLEHLEQGDVAETISVFFENSSVVSPCAKSTLTIQDVDLFLERLSHLTKEEEQIQH
FRFILDKCTFNDLKMIIRLIKHDLRINAGPKHILEGVHVDAYRAFQMFRDLETVIRRFLP
NVDKKQGASSSSLNRDKVAVSLMTPVLPMLAEACTSVEMAMRKCPNGMLSEVKYDGERVQ
VHKSGNDFRYFSRSLKPVLPHKVNLFKDYIAQAFPDGDDLILDSEVLMVDNETEQPLPFG
TLGIHKKEEFKNANVCLFIFDCLYYNGEILMNKSMLERRNILKDRMTEIPNRIMLSEVYE
VHDPRDLAERIVHVLKLGLEGLVLKDIDSKYEPGKRHWLKVKKDYLCGGAMADSADLVVL
GAWYGTGNKGGIMSVFLMGCYDEEHDRWLTVTKVHTGHDDATLAALQDELDMIKIGKDME
KLPSWLHAKKPMVPDFIARDPKKQPVWEITGAEFTNQGMHTADGISIRFPRVTRIRSDKN
WSTATTLNELRQLFRKKPESVDFSLILGTSADVKNSPREKLPNSDKSPKKLANVRKRKSS
PDEPSTSFKTERQSLDIPEIKKNPSKVIEESFEKRIKDKSSEEFDSIADLQSERKRLKTV
KREIKVETENPSLIRIKKESEEEQETADVKDIPREKLGNSDKSPKKLENVRKRRSSLDEP
STSFQIREELLDIPEIKEKPSSVAEESFKKRKKDKRNEKSDKVAHVQSERKRLKTTKEET
RNPSPIKVREESEEEEEQERKDHYVNRFAGRMDSEEFSSDSEEDSRNAGAFDSDVENIRF
SNVLQDVRASLAPDFDKSRRKDARRMLKILGATLVTPQNRFDPTTTHVIHTRAEIPSTVV
LVNLADFPKTAKHVNVSWLEETAAQSRRQGEYWHAVQLVDDYCNCSCTHR
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcgacgtcgaggaggatcagcaagaagagaaatcgttcgccgtggagcgcgcc
aagaccggtcgcgccaagtgcaagcgctgcaaatgcgtgatcgagaagggcgagctgcga
atcgccaggttcgtggcgagcttcttctcggacggtaagctgacggcagcttggcatcac
gtcaattgcctgttcgacgcgttcgctaaacagcgcgccacgaccaagaggatcgacgat
cccgcggaggacgtaaaaggctgggagctgttgtccgacgacgacaagaaggtcatcttc
gacaagttgaaggagttggaaaaatcctatccgattaaagttttgaaaaaacccgcgacg
gcgcagaaagcaggcccttcaggaaaaatgacagagaaaaatttagatcagaaggtgaaa
aagaccgcggcagtcgtagcagatgataagaagaaagataaagaagaaaaagagaaaatc
tcatccaaggatgattcctttcgcgagtttcgacgtctatgcagtaacatcgccgacgtc
gacgcctacactgacaaaacagcgattattaagacgatgttcacgaaaggagcgcaggga
gacggttttaaaggcgacatcgtgctctggtgcaaattgttgctgcccggcgctgtaaag
cgaatttacaacttgcagagcaaacagctgataaaattgttcgcgcgattgttgcttcaa
gacgaggacgaaatgctggagcatttggagcaaggcgacgtggccgagacgatcagcgtg
ttcttcgagaacagctctgtcgtgtcgccttgcgccaagagcacgttgacgatccaagac
gttgacctgttcttagaaagattgtcgcatttgactaaagaagaggagcaaattcaacat
tttcgattcattcttgataaatgtactttcaacgatcttaagatgatcatacgtttgatc
aagcatgacctgaggatcaatgcaggtccaaaacacattcttgaaggggttcatgtggat
gcatatagggccttccagatgtttcgagatttggaaacggtaatacgacgttttctaccg
aacgtggacaagaaacagggtgcctcgagttcgtccttaaaccgcgataaagtggctgtt
tcgttgatgacacccgtcttaccaatgctggcagaagcgtgcacatccgtggaaatggcg
atgcgcaaatgcccaaacggaatgttatcagaagtcaaatatgatggtgaacgtgtacaa
gtgcacaaaagtggaaatgattttcgatatttcagtagatctctcaaaccggtcttacca
cacaaggtgaatcttttcaaggattatatagcgcaggcattccccgacggtgacgatctt
atccttgattccgaggttcttatggttgataatgagaccgagcaacctttgcctttcggc
accttagggattcacaaaaaagaggaatttaaaaatgccaatgtgtgcctttttatattc
gactgcttgtactacaacggcgagatacttatgaacaaatctatgctggaacgcagaaat
atcctgaaggacaggatgaccgagataccgaacagaataatgttgtcggaagtttacgaa
gtgcatgatccgcgggatcttgctgaaaggatcgtgcacgtgttaaaactgggtctcgag
ggtttggtgctgaaggacatcgatagcaaatacgaacccggcaagagacactggttgaag
gtaaagaaggattatttgtgtggtggtgccatggctgatagcgcagatctcgtcgtgttg
ggtgcctggtacggcacaggcaacaaaggtggcataatgtcggtcttcttgatgggctgc
tatgatgaggagcacgatagatggttaactgttaccaaagttcatacaggacatgatgat
gccactttagcggcgttacaggatgaacttgacatgataaagatcggcaaggacatggag
aaattgccgagctggctgcatgcgaagaaacctatggtgccagatttcatagcgagggat
cccaagaaacagccggtgtgggagataacgggcgccgagtttacgaatcaggggatgcac
accgcggacggtatcagtatccggtttccgcgtgtaacacgtattcgcagcgacaagaat
tggtccaccgccaccactctgaacgagctgcgccagctctttcgcaagaagcccgagtcc
gtcgactttagcctcatactaggaacgtcggcggatgtcaagaacagtccgagggagaag
ttacctaactctgacaagtctccgaaaaaattggcgaacgtgagaaagagaaagagctcg
ccggacgagccgtcgacgagtttcaaaaccgagagacagtcgctagatattccggaaata
aaaaaaaacccatcgaaagttatagaagaatcttttgagaaacgaattaaagataaaagt
agcgaagaatttgacagtatcgcagatctccagtcggagagaaagagattgaaaacagtg
aaacgcgaaattaaggtagaaacggagaatccttcgctaataagaatcaagaaggaatcg
gaagaggaacaagaaacggcagatgtcaaggacatcccgagggaaaagttaggcaattcc
gacaagtctccgaaaaagttggagaacgtgaggaaacggaggagctcgttggacgagccg
tcgacgagtttccaaatcagagaagagttattagatattccggaaattaaagagaaacca
tcaagtgttgcggaagaatctttcaaaaaacgaaaaaaagataaacgtaacgagaaatcc
gacaaggttgcgcatgtccagtcggagagaaagagattaaaaacaacaaaggaggaaacg
aggaatccttcaccaataaaagtcagggaggaatcggaagaggaagaggaacaagaacgg
aaggatcattacgttaatcgtttcgctggtcgaatggactcggaagaattctcttcggac
tcggaagaggattcgagaaatgcgggtgccttcgattcagatgtcgaaaacattagattt
agtaacgttctacaggatgtacgagcgagtctcgcgccggacttcgacaagagtaggagg
aaggatgcgcggaggatgctcaaaatactcggcgctacgctggtaacgccgcagaataga
ttcgacccgacgacgacccacgtcatccatacacgcgcggaaattccgtccacggtcgtc
ctcgtgaatctcgcggattttccgaaaaccgccaaacatgtgaatgtgtcctggttggaa
gaaaccgcggcgcagtccagaagacagggtgaatattggcacgcggttcagctggtcgac
gattactgcaattgttcctgcacgcatcgataa
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