Linepithema humile (Argentine ant): 105672733
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Entry
105672733 CDS
T04898
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105672733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105672733
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105672733
Spliceosome [BR:
lhu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105672733
Complex B
105672733
Complex C
U2 SnRNP specific factors
105672733
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MscL
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
105672733
NCBI-ProteinID:
XP_067204263
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Position
1:33987004..33990775
Genome browser
AA seq
768 aa
AA seq
DB search
MSYHRGGGNKPKGFGFAGFQVSGTKRSGTNIPPPPPNSALSKQGYHTMNAITENALSACW
GMPKKRSKTEEEYFEDDDEPPTSSLEYIPAPGSPTYDLMKKSSKKDESDSEEDPLDAFMA
GIDAEVKRNSSAAQCDDQRKEDKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQE
IEYDEDGNPIAPPKKKEIDPLPPIDHSEIEYESFEKNFYNVHEEIASLGKQQIDDLRKTL
GIKVSGPSPPNPITSFGHFGFDDPLIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKT
GSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCC
CYGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLARVTFLVLDEADRMFDMGFEP
QVRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPVRIVQGDVGEANTDVTQHVIMFH
NNPSGKWTWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERN
KVITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTA
YTLVTEKDKEFAGHLVRNLEGANQEVPKSLIDLAMQSAWFRKSRFKGGKGKSMNVGGAGL
GFRGRPDTSNSSGSSSQASKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRASSDH
TWEQTITPPSVIMPPPPTVPPPKPVGQDSEASNSSAPERKRVRKSRWE
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccaccgaggaggtggtaataagccaaaaggttttggctttgctggcttccaa
gtgtctggaacaaaaaggagtggcactaatatacctccaccaccaccgaattctgccttg
agtaaacaaggctatcatacaatgaatgctattacagaaaatgctctatctgcttgttgg
ggcatgccgaagaagcgcagtaaaaccgaggaagagtattttgaggatgatgatgaacct
ccaacttcctcattggaatatatacctgcacccggttctcccacatatgacttaatgaaa
aaatcgtcaaagaaggatgagagtgacagtgaagaagatcccttggatgctttcatggcg
ggtattgatgcagaagttaaacgaaacagttctgcagctcaatgcgacgaccaacgtaaa
gaagacaaatctaagggatttcgggcagatatcgatggagaggatgatgaggagagttac
tacagatatatggaagaaaatccaactgccggcttgcagcaagaagaatccgatcaagaa
attgaatatgacgaagatggcaaccccatcgctccaccaaaaaagaaggaaatcgatcca
ttaccgccgattgatcacagcgaaatagaatatgagtcatttgagaaaaatttttacaat
gtgcatgaggagatcgcaagtttgggtaaacaacagatcgacgatttgagaaagactctg
ggtataaaggtatccggaccgtctccgccgaatccgattacaagtttcggccatttcggt
ttcgacgacccgctcataaaggctatccgtaagaacgagtacacacagcccacgcctatt
caggcgcaggcggttcccgccgctttaagcgggcgagatataataggcatagcgaaaacc
ggtagcggcaaaacggcggcgtttatctggccgatgttggtgcacattatggatcagcgt
gaactgaaagctggagacggtcctatcggtcttattctggcgccgaccagagaattgtct
caacagatttatcaagaagcgaaaaaattcgggaaagtttacaatattcaagtgtgctgt
tgctacggaggtggcagcaaatgggaacagagcaaagcgttggaaagcggcgcggaaatc
gtagtcgccactcctggcagaatgatcgatctagttaagatgaaagcaacgaatttggcc
agggttacgtttttggttctggacgaagccgacagaatgttcgacatgggatttgaaccg
caagtacgatctatatgtaatcacgtgaggcctgataggcaaacattgctatttagcgcg
acattcaaaaagaaagtagagaaacttgctagagacgttctgacagatccggttaggata
gtgcaaggtgacgtcggcgaggctaacaccgacgtgacacagcacgttatcatgttccat
aacaatcctagtggcaaatggacctggctgctgcagaacttggtcgaatttctaagcgct
ggcagtcttttgatctttgtcactaagaagctgaacgcggaagagctcgccaacaatctc
aaactcaaagagtttgacgtgttgcttctgcacggtgatatggatcagattgagaggaac
aaagtgattacggctttcaagaagaaggatgtcagtaccttagtcgccactgacgtagcc
gcgcgaggtttggacattccgcatatcaagactgtggtgaattacgatgtagcgcgagat
atcgatacacatacacacagaataggaagaacaggccgagccggtgagaagggcacagcg
tacactcttgtaacggaaaaagataaggagtttgctggacatttagtgagaaacttggaa
ggagcgaatcaagaagtgccaaagagcttgatagatttggccatgcagagcgcttggttc
aggaaatcgaggtttaagggtggaaaaggaaagagcatgaatgtcggtggagctggactt
ggtttcagaggcagacccgatacttcaaattcgagcggatcatcgtcgcaagcatccaag
gatattagcgaagttgttaaaaaactagaaagacacgggccaggtagcgatcgactttcc
gctatgaaagccgctttcagaagtcaatataattcccagttccgagcatcatcggatcac
acctgggaacaaacaatcactccaccttccgtgataatgccgcctccaccgactgttccg
ccaccaaagcccgtgggccaggacagtgaagcctccaattcttcagcaccggagcgtaaa
agagtgcgaaaaagtcgatgggagtga
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