Linepithema humile (Argentine ant): 105673270
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Entry
105673270 CDS
T04898
Symbol
DNAlig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03030
DNA replication
lhu03410
Base excision repair
lhu03420
Nucleotide excision repair
lhu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105673270 (DNAlig1)
03410 Base excision repair
105673270 (DNAlig1)
03420 Nucleotide excision repair
105673270 (DNAlig1)
03430 Mismatch repair
105673270 (DNAlig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhu03032
]
105673270 (DNAlig1)
03400 DNA repair and recombination proteins [BR:
lhu03400
]
105673270 (DNAlig1)
Enzymes [BR:
lhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105673270 (DNAlig1)
6.5.1.6 DNA ligase (ATP or NAD+)
105673270 (DNAlig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
105673270 (DNAlig1)
DNA replication proteins [BR:
lhu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
105673270 (DNAlig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
105673270 (DNAlig1)
DNA repair and recombination proteins [BR:
lhu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
105673270 (DNAlig1)
NER (nucleotide excision repair)
Other NER factors
105673270 (DNAlig1)
MMR (mismatch excision repair)
Other MMR factors
105673270 (DNAlig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
105673270
NCBI-ProteinID:
XP_012224215
LinkDB
All DBs
Position
6:complement(1279131..1284334)
Genome browser
AA seq
984 aa
AA seq
DB search
MIVRLWYRCVAYTREICQKCVKANRSGVIMTQRRIDSFFTILSSKKENSSQDTLESNKAD
KQKDQVALGNGKRKRNKSSEFVSSPSKKSDTKLKKPKTVSKTPSPIAKSHAKGATPKIKL
DEASAKESKKAEKRKLKDSANVQKKKEKDAAVSKVEIAENTETENGKIKSKTEKKSTSSE
IKSVFDETEKTKNVKKKRSRILQIVDSSDDEDHLSLPESPQKTEDNDKETKIESLDKSNK
KKKNDSDEEVDKNDSDEEVDRNGSNKKVDKNSSDEEVNNVTSDNEEKSKSPKKESTPEKK
SSKKMHSFFTSKQKDNAEDEKKGNTKSANQSYNPSASNYHPIDNACWKRGDKTPYSAFAR
TLELIEETSARLKIVEILSNYFRSVIVLSPSDLLPSMYLCLNQLAPAYEGIELGVADTNL
MKAIAQCTGRTLAQIKADVQEVGDLGLVAEGSRSNQRTMFQPAPLTVPNMYSKLKEIAQM
TGHASVTKKLDKIQTLFVACRNTEARYLIRSLAGKLRIGLAEQSVLQALALACAMTPPEQ
EYPPEILNASKKMSNDRFKEKYDEIALILKTTYCECPNYNLIIPVLLEDGISALPSKCKL
TPGIPLKPMLAHPTKGIQEVLTRFEGLKFTCEWKYDGERAQIHVADNGQINIYSRNQENN
TSKYPDIIKRFKNTRGDLVKNCVLDCEAVAWDSEKKQILPFQILSTRKRKDANEEDIKVQ
VCVFMFDLLYLNDEPLVKEPFAKRRELLREHFKEVEGEWKFANSMDTTTMEEVQVFLDDS
VKGNCEGLMVKTLEQDATYEIAKRSRNWLKLKKDYLDGVGDTLDVVVIGGYIGKGKRTGT
YGGFLLACYDQENEEYQSICKIGTGFKEEDLENHTKFFKDHVVPQAKSYYRFDSSHEPDH
WFEPVQVWEIKCADLSLSPVHRAATGIVDSEKGISLRFPRFIRIREDKNCEQATSAQQVA
DLYNNQEQIKNQTSKSKVTEEDFY
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgattgtaaggttatggtatcgttgtgttgcatatacgcgggaaatctgtcaaaagtgc
gtaaaagctaatagaagcggtgtaataatgacgcaacgtcgtatagattcttttttcact
atattatcgtccaagaaagagaattcgagtcaggatacgttggagagtaacaaggctgac
aagcagaaggatcaagttgcattaggaaatgggaaacggaagagaaacaagagcagtgaa
tttgtcagttctccttcaaagaaatctgatactaaacttaagaagccaaaaacagtttcc
aagactccttctccaattgcaaagtctcatgcaaaaggagctactccaaaaataaagttg
gatgaagcttcagctaaagaatcaaaaaaggcagaaaaaagaaaactgaaagattcggcc
aatgtacagaaaaagaaggaaaaagatgcagcagtaagtaaagttgagatagcagaaaat
actgaaacagaaaatggtaaaattaaaagtaaaacagaaaagaaatctacatcttcagaa
ataaaatctgtatttgatgagacagaaaaaacaaagaatgtaaagaagaagcgaagtagg
atacttcagatagtagattccagcgatgatgaggatcatttatcattaccagaaagcccc
caaaaaactgaggataatgataaagagacaaaaattgaaagcttagacaagtctaataaa
aagaaaaagaatgattcagatgaggaagttgacaagaatgattcagatgaggaagtagac
agaaatggttcaaataagaaagtggacaagaatagttcagatgaggaagtaaacaatgtt
acttcggataatgaagagaaaagcaaaagcccgaagaaggagtctacgcctgagaagaag
tcatctaagaaaatgcacagctttttcacgtctaagcaaaaagacaacgcagaggatgaa
aaaaagggcaatacaaaaagcgccaaccagtcttacaatcctagcgcatctaactatcat
ccgatagacaatgcatgttggaaacgaggcgataaaactccgtatagcgcatttgcacgc
actttggaactcatcgaggagacaagcgcaaggctgaagatagtagaaatattatcgaat
tactttcggtctgttatagttctgagcccctcggatctcctgccaagcatgtatctgtgc
cttaatcaattagcgccggcatacgaaggaattgaacttggagtcgctgatacaaacttg
atgaaggcgatagcgcagtgtaccggtagaaccctggcgcaaattaaagccgatgttcaa
gaagtcggcgatttaggacttgtagcggaaggtagcagatctaatcagagaactatgttt
caaccggcaccactgacggttcccaacatgtactctaagctaaaggagatcgctcaaatg
acagggcacgcgtctgtaacgaagaagctggataaaattcagacgttgtttgtggcgtgc
cgtaataccgaggcgagatacctcatcagatcgttagccggaaagcttcgcattggattg
gcagagcaatctgttttgcaagctttggctctggcttgtgctatgacaccaccggaacaa
gagtatccaccagagattctgaacgcgagcaaaaaaatgtcgaacgaccgcttcaaggag
aaatacgatgaaatagcgcttatactgaaaacaacatattgtgaatgtccgaattacaac
ctcataattcctgttctactggaagatggaattagtgccttaccgagcaagtgtaaactc
actcctggaatacctttgaaacctatgctggcgcatcctactaagggtattcaggaagtt
ctgacgcgattcgagggtttgaaattcacgtgcgagtggaaatatgacggagagagagca
cagatacacgttgcggacaacggccagatcaatatctacagcagaaatcaagagaacaat
accagcaagtatccagatattatcaaacgttttaagaacactcgcggcgatctggtcaag
aattgcgtactcgattgcgaggcggtcgcctgggatagcgagaagaagcaaatcctaccg
ttccagatactcagcacgagaaagcgaaaggatgccaacgaagaggacatcaaagtgcaa
gtgtgcgtgttcatgttcgatctgttgtatctaaacgacgagccgttggtgaaggaacca
ttcgcaaaacgtcgcgagttgttgagagagcactttaaggaagtggagggcgaatggaag
ttcgccaacagcatggatactacgacgatggaagaggtgcaagtctttctggacgattct
gtgaaaggaaattgcgaaggtctgatggtgaaaacattggagcaggacgcaacgtatgag
atcgcgaagcgatcgagaaactggctgaagttgaagaaggattatctggacggcgtcggc
gatacacttgacgtggttgtaatcggtggttacatcgggaagggaaagaggaccggcact
tacggtggcttcctcctggcttgttacgatcaggaaaacgaggaatatcagagcatttgc
aaaattggtacaggcttcaaggaagaagatcttgagaatcacactaaattcttcaaggat
catgtagtaccccaagctaaatcgtattatcgcttcgacagcagccacgagccagatcac
tggttcgagcctgttcaagtgtgggagatcaagtgcgcagatctctccctttcgcccgtt
cacagagcggctactggaatagttgattcggagaagggaatatctttgagatttccacga
tttatcaggattcgcgaggataagaactgcgaacaggccacctctgctcagcaagtagcg
gacttgtacaacaatcaagaacagatcaagaatcaaacgtcgaaatcgaaagttacagag
gaggatttctattaa
DBGET
integrated database retrieval system
