Linepithema humile (Argentine ant): 105673743
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Entry
105673743 CDS
T04898
Symbol
spel1
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105673743 (spel1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhu03400
]
105673743 (spel1)
DNA repair and recombination proteins [BR:
lhu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105673743 (spel1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
105673743
NCBI-ProteinID:
XP_012225009
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Position
8:11742673..11755925
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AA seq
923 aa
AA seq
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MAVQPNQQFSMDPPTQQSFVRFFKSLPEKLNTTIRLFNRSDYYTVHGSDALFAAQQIFKT
TSVCKMIGAEPNKTEGVILNKGHFETFVRDLLLVKQYRVEVYVNQGSAKNQNWILEYKGS
PGNLSHFEDILFGNNDIAVGVSVIAVRLGTEGKSRVVGLSCIDVVSTLISVTEFQDTESF
SNLESLVVTLAPKECLLIQGEGSYEFQTLKQLIERSNVMVTLRKKSEFSSDSIVDDLNTL
IKFKKGQKQNAQSIPEINLNLAMSATSALIKYLDLTSDEGHMNQFTINQVEQSRYIRLDS
AAIKALNIEPHVDAGSNLHGNPVASILTLLDKCRTAQGHRLIAQWVRQPLRDLSLIKERH
DVVELLVKNNELRSILSDDYLKRIPDLQQLAKKLARKKSALQDCYKIYLCISYLPKLLEQ
LLPEANVTALKAMIIDPLRELVEDMDKFQQLVEQTIDLDAAEKGDFMVNPGFADDFKTLK
DAMDEMEERIQQLLGKAADDLCLEAGKTIKLECNQQLGYYLRITLKEEKILRNKKHYTIL
DSNKTGVRFRNSKLSELNDDFISARNKYLERQKDVIAEIVGIAAGYSETVRAIGGVLACL
DVLTAFASAAISANKVYVRPEMVPSEKGELNLIQVRHPCLEMQQGIDYIANDVTFKRDKC
HFCIITGPNMGGKSTYIRSVGVTALMAHIGSFVPCDKATISLLDCILARVGADDSQLKGL
STFMMEMIETAAILKTATCNSLVIIDELGRGTSTYEGCGIAWSIAEHLARDIKSYCLFAT
HFHEITKLAEEISTVKNQHVTALVEDNKLTLLYQVKPGICDQSFGLHVAKMANFPQNVIE
FAKRKQAELEDYQSVVFEGSDNPQKKRKIIQEAETLISQFLMKCKTLDQSLSDADLENQI
SSLREDVLSHKNPYIEALLTASS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggcagtacaacctaaccaacagtttagtatggatcctcctacacaacaaagttttgtc
agattttttaaaagtctgccagagaaacttaacacaacgatacgactcttcaatagatca
gactattatacagtgcatggaagtgacgctctgtttgctgcacagcaaatatttaaaaca
acatctgtttgcaaaatgatcggagctgagccgaataaaacggaaggtgttattctcaat
aaaggccatttcgagacatttgtacgcgatttgttgttagtaaagcagtacagagttgaa
gtttatgttaatcaaggctccgcgaaaaatcaaaactggatcttagagtacaaaggttca
cccggcaatctatctcatttcgaagatatcttattcggcaataatgacatagccgtgggc
gtatccgtaatagctgtgagattgggtacagaaggaaagtccagagtcgtcggtttaagt
tgcatcgacgtcgtttcaactttaatttcagtcactgaatttcaagacaccgagtcattt
tcgaatctagagtcactcgttgtaactctcgctccaaaggaatgcttattgattcaagga
gaaggcagttatgaatttcaaactcttaaacagctgatagaaagaagcaacgtgatggta
actttaagaaagaaaagtgaattttccagcgattcgatcgtagatgatttaaacacgttg
ataaaatttaagaaagggcagaaacaaaatgcgcagtcaataccagaaattaacttaaat
ctggctatgtctgctacatctgctctcattaaatatttagatttaacatcggatgaaggt
catatgaatcaatttaccataaatcaagtggaacaatcgcgatacataagactggattct
gccgcgataaaagctctcaacattgagccacacgtcgatgcaggttctaatttacatgga
aatcctgttgctagcatcttgacattgctagacaaatgtagaaccgcacaaggacacaga
ctgattgcacagtgggttcgacagcctcttagagatttatctttgataaaagagcggcat
gatgttgttgaactattggtaaaaaataacgaattaagatctattctcagtgacgattat
ttaaaacgtataccggatttgcaacagctggcgaagaaattggctagaaagaaatcagca
ttgcaagactgttacaaaatctatttgtgtatatcgtacttgccaaaattgctggaacaa
cttttaccagaagcaaatgtgacagcattgaaagcaatgataatagatccattgagagaa
cttgtcgaagatatggacaagtttcaacagctggtggagcaaacaatcgatttagatgct
gccgaaaaaggagatttcatggttaatccaggatttgcagacgattttaaaacgctaaaa
gatgcgatggatgaaatggaagaaaggatacaacaattactcggtaaagcggcggatgat
ctttgcttggaagcaggaaaaacaataaagttggaatgtaatcaacagttgggctactat
cttcgcattacattgaaagaagagaagatacttcggaataaaaaacattacaccattttg
gattctaataaaactggtgtaagattccgaaacagcaaattaagcgaattgaatgacgat
tttatatctgctagaaataaatacttggaaagacaaaaggatgttattgcagaaattgtg
ggaattgcagctggttatagcgaaacggtgcgtgctatcggtggtgtgcttgcgtgtctc
gatgttctcactgcgttcgcttctgcagcaataagtgctaataaagtgtacgtgcgtccc
gaaatggtcccgagtgaaaaaggtgaattgaatctcattcaagttagacacccgtgtttg
gaaatgcaacaaggaatagactatattgccaatgatgtcacttttaagcgagataaatgt
catttttgcattattactggtccaaacatgggaggtaaaagtacttacattagatctgtt
ggtgtaactgcactgatggctcatatcggcagttttgttccttgtgataaagcaactata
tcattactggattgtatattggctcgagtgggagcggatgattctcagttgaaaggattg
tcgacttttatgatggaaatgatagaaactgcagctattttgaaaacagcaacgtgtaat
tctcttgtaattattgatgaattgggcagaggaacatcaacttacgagggttgtggcatt
gcatggtcaatagcagaacatttggcgagagatattaaatcgtactgtctgtttgctaca
catttccatgagatcaccaaactagccgaagaaatatctactgtaaaaaatcagcatgtt
accgctcttgtcgaagataataaattgacgttgctttatcaagtaaagccaggaatttgc
gatcaaagtttcggccttcatgttgccaaaatggctaatttcccgcaaaatgtaatagag
ttcgctaaaagaaaacaagcagaacttgaggactatcaaagtgtagtttttgaaggatct
gacaatccccagaagaagcgaaagattattcaggaagctgaaacacttatctcacaattc
ctcatgaaatgtaaaactttggatcaatctttatctgatgccgatctggaaaaccaaata
tcgtcattgagggaagatgttctctctcataaaaatccttatatcgaagcattgctcacc
gcttcttcttaa
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